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[178496_at]

Description C17E4.1 /REP_DB=WormBase Gene ID /WP=CE08250 /TR=Q93232 /GB=CAB02749.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 10.9
(-3)
A 		15.2
(-2)
A 		14.6
(-2.2)
A 		37.4
(3)
A 		27
B 6.9
(-1.6)
A 		3.9
(-3)
A 		16.8
(3)
A 		7.2
(-1.5)
A 		13
C 2.8
(-1.7)
A 		0.9
(-3)
A 		10
(3)
A 		3.2
(-1.5)
A 		9
avr 6.9
(-2.9) 		6.7
(-3) 		13.8
(1.6) 		15.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		0.6
(-3)
A 		1.3
(-2.8)
A 		3.2
(-2.4)
A 		1.1
(-2.9)
A 		27.9
(3)
A 		27
B 1.4
(-2.5)
A 		10.6
(3)
A 		3.7
(-1.1)
A 		8.1
(1.5)
A 		1.5
(-2.5)
A 		0.6
(-3)
A 		10
C 2.5
(-2.2)
A 		15.4
(3)
A 		1.2
(-2.7)
A 		1.7
(-2.5)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		15
avr 1.8
(-2.4) 		8.9
(2.4) 		2.1
(-2.2) 		4.3
(-0.7) 		1
(-3) 		9.7
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4
(-1.1)
A 		3.3
(-3)
A 		3.8
(-1.6)
A 		5.5
(3)
A 		2
B 2.2
(-0.5)
A 		1
(-3)
A 		3.9
(3)
A 		1.5
(-2)
A 		3
C 0.9
(-1.9)
A 		0.3
(-3)
A 		3.5
(3)
A 		0.5
(-2.6)
A 		3
avr 2.4
(-0.5) 		1.5
(-3) 		3.7
(3) 		2.5
(-0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.3
(-2.9)
A 		0.2
(-3)
A 		0.3
(-2.9)
A 		0.8
(-2.5)
A 		0.3
(-2.9)
A 		6.8
(3)
A 		7
B 0.5
(-2.5)
A 		3.5
(3)
A 		0.9
(-1.7)
A 		2.2
(0.6)
A 		0.6
(-2.3)
A 		0.2
(-3)
A 		3
C 0.9
(-2)
A 		4.7
(3)
A 		0.3
(-2.7)
A 		0.4
(-2.6)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		5
avr 0.6
(-2.3) 		2.8
(3) 		0.5
(-2.5) 		1.1
(-1.1) 		0.3
(-3) 		2.4
(2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.879
Sequence Type Exemplar sequence
Representative Public ID C17E4.1 NCBI
Target Description C17E4.1 /REP_DB=WormBase Gene ID /WP=CE08250 /TR=Q93232 /GB=CAB02749.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060099 NCBI Caenorhabditis elegans C17E4.1 (C17E4.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000000964 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9415298:9418218:-1 11/11 None
C17E4.1 ENSEMBL cdna:known chromosome:CEL140:I:9415298:9418218:-1 gene:C17E4.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000944 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9415228-9418149(-) 98.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E4.1
Entrez Gene 182724 Entrez gene
SwissProt Q93232 EMBL-EBI
WormBase CE08250 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02749 Hypothetical protein C17E4.1 [Caenorhabditis elegans] ref|NP_492500.1| C17E4.1 [Caenorhabditis elegans] 0.0
blast AAC04433 Hypothetical protein T09A12.1 [Caenorhabditis elegans] ref|NP_501383.2| T09A12.1 [Caenorhabditis elegans] 1.0E-100
blast AAB96696 Hypothetical protein F33D11.2 [Caenorhabditis elegans] ref|NP_491696.1| F33D11.2 [Caenorhabditis elegans] 7.0E-99
Sequence
Target Sequence 
>C. ELEGANS:178496_AT
acaatggcacattaactttacctaaccaaatttttcaaaccttcaactattctgaaaatt
tcagtgcttaccggagatcaacggatgttggatgttctacagggtggcccataattatgg
gccacactgtagaaaagataaaagatttgaaaaagaactctggatggaagaaatgcaagg
ttctgaaagcaaacgagaaaactctagacaacgatggtgaaccaattggagaatcgattt
attttagtgcaagagtcctccagcttgtcaaaatggaaccattgatctcgaaagaagtat
caaaagaagatcaagagattcttcgaggttactgtagatccaacgatcataaggacaaag
tggaaccaattttcgaggctattgctgtgtcaattcttgagaaggttacatcgaaaaatg
agtttattcggaacgtttcaattcctggacagttgagaatgtttgcagttgacgagaaaa
agtcgaagttttcgacaatggctcttctcattgttcgaagcgacctattctactacgctt
ggaataaaccttcactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATGGCACATTAACTTTACCTAA 271 113 1535 Antisense
GCACATTAACTTTACCTAACCAAAT 437 313 1541 Antisense
TCAACGGATGTTGGATGTTCTACAG 430 631 1612 Antisense
TTGGATGTTCTACAGGGTGGCCCAT 164 651 1622 Antisense
CCATAATTATGGGCCACACTGTAGA 103 269 1643 Antisense
ACTCTAGACAACGATGGTGAACCAA 327 95 1735 Antisense
GGAGAATCGATTTATTTTAGTGCAA 421 519 1762 Antisense
TTCTCATTGTTCGAAGCGACCTATT 39 689 2039 Antisense
GTTCGAAGCGACCTATTCTACTACG 183 441 2047 Antisense
GCGACCTATTCTACTACGCTTGGAA 307 287 2054 Antisense
ACGCTTGGAATAAACCTTCACTGGA 580 91 2069 Antisense
Sequence Source Affymetrix Proprietary Database