[Home] | [Total List]

[178495_at]

Description F14H3.4 /REP_DB=WormBase Gene ID /WP=CE15829 /TR=O45366 /GB=CAB05486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 6.6
(-2.8)
A 		5.6
(-3)
A 		5.3
(-3)
A 		45.3
(3)
A 		40
B 18.4
(3)
A 		3.3
(-2.8)
A 		2.9
(-3)
A 		11.7
(0.4)
A 		16
C 2.5
(-2.8)
A 		3.6
(-2.5)
A 		1.4
(-3)
A 		29.8
(3)
A 		28
avr 9.2
(-1.6) 		4.2
(-2.8) 		3.2
(-3) 		28.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 15.1
(-1.5)
A 		1.8
(-3)
A 		20.9
(-0.8)
A 		6.9
(-2.4)
A 		54.1
(3)
A 		42.9
(1.7)
A 		52
B 2.8
(-2.9)
A 		3.3
(-2.8)
A 		5.9
(-2.6)
A 		1.2
(-3)
A 		24.5
(-1.2)
A 		77.5
(3)
M 		76
C 3.2
(-2.8)
A 		9.7
(-2.3)
A 		0.9
(-3)
A 		1.9
(-2.9)
A 		33.6
(-0.5)
A 		80.8
(3)
A 		80
avr 7
(-2.7) 		4.9
(-2.8) 		9.2
(-2.4) 		3.3
(-3) 		37.4
(0.2) 		67.1
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.4
(-1.7)
A 		1.2
(-3)
A 		1.4
(-2.8)
A 		6.6
(3)
A 		5
B 5.9
(3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		2.5
(-0.9)
A 		5
C 0.8
(-2.6)
A 		1
(-2.3)
A 		0.5
(-3)
A 		5
(3)
A 		5
avr 3
(0.3) 		1
(-2.8) 		0.9
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.8
(-2.2)
A 		0.6
(-3)
A 		4.5
(-1.5)
A 		1.7
(-2.6)
A 		16.3
(3)
A 		10.4
(0.7)
A 		16
B 1
(-2.9)
A 		1.1
(-2.8)
A 		1.4
(-2.8)
A 		0.3
(-3)
A 		10
(-1)
A 		28.9
(3)
M 		29
C 1.2
(-2.8)
A 		3
(-2.4)
A 		0.2
(-3)
A 		0.4
(-3)
A 		10.9
(-0.6)
A 		27.1
(3)
A 		27
avr 1.7
(-2.7) 		1.6
(-2.8) 		2
(-2.7) 		0.8
(-3) 		12.4
(0.3) 		22.1
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13964
Sequence Type Exemplar sequence
Representative Public ID F14H3.4 NCBI
Target Description F14H3.4 /REP_DB=WormBase Gene ID /WP=CE15829 /TR=O45366 /GB=CAB05486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074637 NCBI Caenorhabditis elegans F14H3.4 (F14H3.4) mRNA, complete cds. 11/11 None
SNAP00000013821 ENSEMBL cdna:SNAP chromosome:CEL140:V:16056724:16057638:-1 11/11 None
GENEFINDER00000013835 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16056724:16057830:-1 11/11 None
F14H3.4 ENSEMBL cdna:known chromosome:CEL140:V:16056724:16057830:-1 gene:F14H3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16056723-16057830(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H3.4
Entrez Gene 180076 Entrez gene
SwissProt O45366 EMBL-EBI
WormBase CE15829 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 1.0E-133
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 1.0E-130
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 1.0E-108
blast CAB05481 Hypothetical protein F14H3.5 [Caenorhabditis elegans] ref|NP_507039.1| F14H3.5 [Caenorhabditis elegans] 2.0E-24
blast CAB05481 Hypothetical protein F14H3.5 [Caenorhabditis elegans] ref|NP_507039.1| F14H3.5 [Caenorhabditis elegans] 3.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013835 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:178495_AT
gattcatcaatccacaaactaccatgaccatgaaaattgcatgtttttctctatttttaa
cgcaccagtggaccaccgccaacaccatagatgagtgtgaaacacggctgaaacagtatc
gaacggattatgaaagagtgctatctcaaagaaaaccaagtattcaaaagattcaacaat
acgaagcggagttacaacaacttcaacatgacagaagaacacacgaagcggcatttcaac
tgttacgaagagtgcttcgcgaagatggaataccaaagcgagatttgtttcaagagtcac
tacaagtatgcaggagacggcttggagagtttgatgataatgaagaaggaattaatgaat
tgcttaatgcagagagaacaaatttcgacggacttcaaagcactagaaagttcatcaaga
aaatgcttgtgacacataaaaaaactcttgagcaactcgaagaaaaggaagcaggtgacg
tgtcggaaacggtcatggatcgaatgataaaagaattacgcaaacgtcggagggatgatg
aggatgatgaggaaggcccaagcactcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCATCAATCCACAAACTACCAT 538 431 257 Antisense
AATCCACAAACTACCATGACCATGA 508 167 265 Antisense
GCATGTTTTTCTCTATTTTTAACGC 152 311 295 Antisense
TTTTTAACGCACCAGTGGACCACCG 298 445 310 Antisense
CCACCGCCAACACCATAGATGAGTG 150 275 329 Antisense
GAACACACGAAGCGGCATTTCAACT 200 353 473 Antisense
GCAGGAGACGGCTTGGAGAGTTTGA 363 311 566 Antisense
AAATTTCGACGGACTTCAAAGCACT 512 115 636 Antisense
AAAGGAAGCAGGTGACGTGTCGGAA 280 119 720 Antisense
GACGTGTCGGAAACGGTCATGGATC 56 377 733 Antisense
TGATGAGGAAGGCCCAAGCACTCGG 355 567 801 Antisense
Sequence Source Affymetrix Proprietary Database