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[178492_at]

Description T05D4.5 /REP_DB=WormBase Gene ID /WP=CE16345 /TR=O45751 /GB=CAB03295.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.6
(2.6)
A 		4.3
(1.6)
A 		3
(-3)
A 		4.7
(3)
A 		2
B 1.6
(-3)
A 		4
(1.8)
A 		2.7
(-0.8)
A 		4.6
(3)
A 		3
C 3.8
(3)
A 		2.4
(-3)
A 		3.1
(0)
A 		3.8
(3)
A 		1
avr 3.3
(-1.4) 		3.6
(-0.2) 		2.9
(-3) 		4.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 2.4
(-2.8)
A 		1.5
(-3)
A 		5.2
(-2.3)
A 		2.7
(-2.8)
A 		32.9
(3)
A 		22.2
(1)
A 		31
B 2.5
(1.9)
A 		2.9
(3)
A 		1.2
(-1.9)
A 		1.2
(-1.9)
A 		2
(0.4)
A 		0.8
(-3)
A 		2
C 3.7
(-2.9)
A 		3.6
(-3)
A 		5.8
(-1.4)
A 		11.6
(3)
A 		3.6
(-3)
A 		5
(-2)
A 		8
avr 2.9
(-2.9) 		2.7
(-3) 		4.1
(-2.2) 		5.2
(-1.5) 		12.8
(3) 		9.3
(0.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.7
(3)
A 		0.9
(-1.8)
A 		0.8
(-2.4)
A 		0.7
(-3)
A 		1
B 0.5
(-3)
A 		1
(3)
A 		0.6
(-1.8)
A 		1
(3)
A 		1
C 1.3
(3)
A 		0.7
(-2.1)
A 		1.1
(1.3)
A 		0.6
(-3)
A 		1
avr 1.2
(3) 		0.9
(-1.5) 		0.8
(-3) 		0.8
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-2.9)
A 		1.1
(-2.6)
A 		0.7
(-2.8)
A 		9.9
(3)
A 		5.4
(0.2)
A 		10
B 0.9
(2.1)
A 		1
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.8
(1.3)
A 		0.3
(-3)
A 		1
C 1.4
(-1.5)
A 		1.1
(-3)
A 		1.5
(-1)
A 		2.3
(3)
A 		1.2
(-2.5)
A 		1.7
(0)
A 		1
avr 0.9
(-3) 		0.9
(-3) 		1
(-2.8) 		1.1
(-2.6) 		4
(3) 		2.5
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7498
Sequence Type Exemplar sequence
Representative Public ID T05D4.5 NCBI
Target Description T05D4.5 /REP_DB=WormBase Gene ID /WP=CE16345 /TR=O45751 /GB=CAB03295.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067406 NCBI Caenorhabditis elegans T05D4.5 (T05D4.5) mRNA, complete cds. 11/11 None
SNAP00000043734 ENSEMBL cdna:SNAP chromosome:CEL140:III:13580366:13583073:1 11/11 None
GENEFINDER00000043741 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13580366:13583073:1 11/11 None
T05D4.5 ENSEMBL cdna:known chromosome:CEL140:III:13580366:13583105:1 gene:T05D4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13580361-13583069(+) 88.2 100.0
Public Domain and Genome References
Gene Title
Ensembl T05D4.5
Entrez Gene 176792 Entrez gene
SwissProt O45751 EMBL-EBI
WormBase CE16345 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03295 Hypothetical protein T05D4.5 [Caenorhabditis elegans] ref|NP_499807.1| T05D4.5 [Caenorhabditis elegans] 0.0
blast CAE59667 Hypothetical protein CBG03087 [Caenorhabditis briggsae] 8.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.4E-9
Sequence
Target Sequence 
>C. ELEGANS:178492_AT
agcagagaaagtagagcggttggataagaaaattgatgagattaaagcaagaaaaattga
tgaaaaattgatcgagcgagaaatcgtaagagcggaatcgccaaaattcgaaccaaaaac
cagacggctccgcgtggaaaagttcttcaatcagcagaagcagaaaaaagagaatgaatg
gatggaaaagctgaaggtggatgcgtcgcggaagcctatgctaagccattgggatttgga
gatgaaaaatattaaagcagagaagaaaaagattggtgcagtgaagaaaaagattaaagc
agagaagaaagaggacaagaagaagccgatgggatggatgtcaactttgaagatggaacg
ggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGAGAAAGTAGAGCGGTTGGAT 182 75 834 Antisense
GATCGAGCGAGAAATCGTAAGAGCG 605 417 903 Antisense
GTAAGAGCGGAATCGCCAAAATTCG 602 459 919 Antisense
TCGAACCAAAAACCAGACGGCTCCG 68 599 941 Antisense
ACCAGACGGCTCCGCGTGGAAAAGT 642 85 952 Antisense
GGCTCCGCGTGGAAAAGTTCTTCAA 12 541 959 Antisense
AAAGCTGAAGGTGGATGCGTCGCGG 364 119 1020 Antisense
TGCGTCGCGGAAGCCTATGCTAAGC 678 581 1035 Antisense
GAAGCCTATGCTAAGCCATTGGGAT 11 345 1044 Antisense
AAGAGGACAAGAAGAAGCCGATGGG 372 117 1142 Antisense
TCAACTTTGAAGATGGAACGGGATG 259 573 1174 Antisense
Sequence Source Affymetrix Proprietary Database