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[178491_at]

Description F46A8.2 /REP_DB=WormBase Gene ID /WP=CE10560 /TR=O01328 /GB=CAB04388.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      6grp_highest_nonorm > 90      6grp_total > 46      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 350.4
(3)
P 		131.8
(-1.1)
A 		30.4
(-3)
A 		29.7
(-3)
A 		321
B 352.3
(3)
P 		88.7
(-1.5)
A 		96.7
(-1.4)
P 		2.4
(-3)
A 		350
C 356.2
(3)
P 		108.2
(-1.3)
A 		82.8
(-1.7)
A 		8.9
(-3)
A 		347
avr 353
(3) 		109.6
(-1.3) 		70
(-2) 		13.7
(-3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 164.4
(2.2)
P 		114
(-1.9)
P 		171.3
(2.8)
P 		100.5
(-3)
P 		174.3
(3)
P 		155.1
(1.4)
P 		74
B 193.1
(3)
P 		151.4
(-0.9)
P 		146.4
(-1.4)
P 		168.3
(0.7)
P 		129
(-3)
P 		168.9
(0.7)
P 		64
C 93.2
(-3)
P 		215.6
(3)
P 		106.2
(-2.4)
P 		99
(-2.7)
P 		99.2
(-2.7)
P 		181.9
(1.3)
P 		122
avr 150.2
(0.6) 		160.3
(1.9) 		141.3
(-0.6) 		122.6
(-3) 		134.2
(-1.5) 		168.6
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 127.6
(3)
P 		28.6
(-1.8)
A 		8
(-2.8)
A 		4.3
(-3)
A 		123
B 112.3
(3)
P 		21.9
(-1.9)
A 		22.4
(-1.8)
P 		0.5
(-3)
A 		112
C 117.9
(3)
P 		31.1
(-1.5)
A 		28.9
(-1.6)
A 		1.5
(-3)
A 		116
avr 119.3
(3) 		27.2
(-1.7) 		19.8
(-2.1) 		2.1
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 30.3
(-1.9)
P 		40.6
(0.3)
P 		37.3
(-0.4)
P 		25.5
(-3)
P 		52.6
(3)
P 		37.8
(-0.3)
P 		27
B 67.2
(3)
P 		50.4
(-0.2)
P 		35.5
(-3)
P 		44.6
(-1.3)
P 		52.4
(0.2)
P 		63
(2.2)
P 		32
C 34.6
(-1.1)
P 		65.8
(3)
P 		27
(-2.1)
P 		19.9
(-3)
P 		32.1
(-1.4)
P 		60.9
(2.4)
P 		46
avr 44
(0.5) 		52.3
(2.6) 		33.3
(-2.2) 		30
(-3) 		45.7
(0.9) 		53.9
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.684
Sequence Type Exemplar sequence
Representative Public ID F46A8.2 NCBI
Target Description F46A8.2 /REP_DB=WormBase Gene ID /WP=CE10560 /TR=O01328 /GB=CAB04388.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031229 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11253947:11257970:1 11/11 None
SNAP00000031224 ENSEMBL cdna:SNAP chromosome:CEL140:I:11256394:11257970:1 10/11 None
F46A8.11 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11256222:11257970:1 gene:F46A8.11 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009693 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11253877-11257193(+) 99.34 100.0
Public Domain and Genome References
Ensembl F46A8.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22258 hypothetical protein F46A8.2 - Caenorhabditis elegans 0.0
blast T15070 hypothetical protein R07C12.2 - Caenorhabditis elegans 0.0
blast AAL06048 Hypothetical protein R07C12.4 [Caenorhabditis elegans] ref|NP_500496.1| R07C12.4 [Caenorhabditis elegans] 1.0E-121
blast T15070 hypothetical protein R07C12.2 - Caenorhabditis elegans 1.0E-110
blast AAL06048 Hypothetical protein R07C12.4 [Caenorhabditis elegans] ref|NP_500496.1| R07C12.4 [Caenorhabditis elegans] 1.0E-108
blast T22258 hypothetical protein F46A8.2 - Caenorhabditis elegans 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:178491_AT
cgatccttccctaggattcggaagtagttcaattggtagtgactcgttgaacattgttga
gaaattttacaatagcactcagttttccacttgcggatccattgttctaatactatcaaa
gcgaaacccagatgagaatgatatttctaaactaatagctaaagttcgatctcaccatgg
aatggttcatgtaattgcatcaaatactccatcaggtggatcccaaccacttaccctcta
tgacctctcatcaaaaacaaatgggctagccgatttccggattgatgatgaatttgacga
gtctgtcataccctttgctgggctgaactatcccatagttaattacgcggtgaatccatt
agtatccggcaatggctccactgtactgcctccactataccaagctcatcgcagccaagc
caagctcacagttactgttcaaaatcatggaacaattgatgcactccaatcatttgacct
cttctggtacaacgcttcatcgtctaccaatggtggttatggtctagattatctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCCTTCCCTAGGATTCGGAAGT 287 249 960 Antisense
GGATTCGGAAGTAGTTCAATTGGTA 356 509 973 Antisense
AAAGCGAAACCCAGATGAGAATGAT 351 119 1077 Antisense
AATAGCTAAAGTTCGATCTCACCAT 332 173 1113 Antisense
AAGTTCGATCTCACCATGGAATGGT 146 157 1121 Antisense
GCCAAGCTCACAGTTACTGTTCAAA 512 277 1378 Antisense
GGAACAATTGATGCACTCCAATCAT 571 527 1408 Antisense
ATGCACTCCAATCATTTGACCTCTT 544 43 1418 Antisense
CTCCAATCATTTGACCTCTTCTGGT 204 237 1423 Antisense
TGACCTCTTCTGGTACAACGCTTCA 692 569 1434 Antisense
GTGGTTATGGTCTAGATTATCTGGT 137 489 1472 Antisense
Sequence Source Affymetrix Proprietary Database