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[178490_at]

Description R09A8.1 /REP_DB=WormBase Gene ID /WP=CE03537 /TR=Q21852 /GB=CAA92003.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.9
(-3)
A 		8
(2.8)
A 		5.9
(0.4)
A 		8.2
(3)
A 		5
B 5.9
(-2.5)
A 		5.5
(-3)
A 		6.3
(-1.9)
A 		10
(3)
A 		5
C 9.5
(0.8)
A 		12
(3)
A 		5.2
(-3)
A 		6.6
(-1.8)
A 		7
avr 6.1
(-2.3) 		8.5
(3) 		5.8
(-3) 		8.3
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.9
(1.2)
A 		2.5
(-3)
A 		5.9
(3)
A 		3
(-2.1)
A 		5.1
(1.6)
A 		5
(1.4)
A 		3
B 3.5
(-1.5)
A 		4.7
(3)
A 		3.2
(-2.6)
A 		4.5
(2.3)
A 		3.2
(-2.6)
A 		3.1
(-3)
A 		2
C 3.2
(-3)
A 		3.7
(-2.2)
A 		4.3
(-1.2)
A 		5.2
(0.3)
A 		5.3
(0.5)
A 		6.8
(3)
A 		4
avr 3.9
(-1.7) 		3.6
(-3) 		4.5
(0.9) 		4.2
(-0.4) 		4.5
(0.9) 		5
(3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(-3)
A 		1.7
(3)
A 		1.5
(1)
A 		1.2
(-2)
A 		1
B 1.9
(1.3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		2.1
(3)
A 		1
C 3.1
(2.2)
A 		3.4
(3)
A 		1.8
(-1.2)
A 		1.1
(-3)
A 		2
avr 2
(1.3) 		2.2
(3) 		1.6
(-2.1) 		1.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-2.1)
A 		0.9
(-2.1)
A 		1.3
(1.3)
A 		0.8
(-3)
A 		1.5
(3)
A 		1.2
(0.4)
A 		1
B 1.2
(-0)
A 		1.6
(3)
A 		0.8
(-3)
A 		1.2
(-0)
A 		1.3
(0.8)
A 		1.2
(-0)
A 		1
C 1.2
(-2.1)
A 		1.1
(-2.5)
A 		1.1
(-2.5)
A 		1
(-3)
A 		1.7
(0.2)
A 		2.3
(3)
A 		1
avr 1.1
(-2) 		1.2
(-1) 		1.1
(-2) 		1
(-3) 		1.5
(2) 		1.6
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17341
Sequence Type Exemplar sequence
Representative Public ID R09A8.1 NCBI
Target Description R09A8.1 /REP_DB=WormBase Gene ID /WP=CE03537 /TR=Q21852 /GB=CAA92003.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077706 NCBI Caenorhabditis elegans R09A8.1 (R09A8.1) mRNA, complete cds. 11/11 A 
SNAP00000001736 ENSEMBL cdna:SNAP chromosome:CEL140:X:12612648:12617801:1 11/11 None
GENEFINDER00000001746 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12612648:12617801:1 11/11 None
R09A8.1 ENSEMBL cdna:known chromosome:CEL140:X:12612648:12617801:1 gene:R09A8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033320 1/11 Cross Hyb Matching Probes None
SNAP00000033314 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12612647-12617801(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09A8.1
Entrez Gene 187722 Entrez gene
SwissProt Q21852 EMBL-EBI
WormBase CE03537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92003 Hypothetical protein R09A8.1 [Caenorhabditis elegans] ref|NP_510107.1| R09A8.1 [Caenorhabditis elegans] 0.0
blast CAA92019 Hypothetical protein T24D5.5 [Caenorhabditis elegans] ref|NP_510106.1| T24D5.5 [Caenorhabditis elegans] 1.0E-101
blast AAF60882 Hypothetical protein Y81B9A.2 [Caenorhabditis elegans] ref|NP_509550.1| Y81B9A.2 [Caenorhabditis elegans] 4.0E-68
blast AAF60882 Hypothetical protein Y81B9A.2 [Caenorhabditis elegans] ref|NP_509550.1| Y81B9A.2 [Caenorhabditis elegans] 8.0E-68
Sequence
Target Sequence 
>C. ELEGANS:178490_AT
tcttcgtcgtcaatcgctgcaaatgtgaatgattatcggtcaaaggctccaacacgaatg
attcactcatcaaaggtttcaacagtgaatgcggctgcctcaaagtttgctgcacctcgt
tgtcaagcaccaaacgtttcacacatgaaaaatggtcaattctcagtcattgacagactg
cttccaagtgactctaacactaagccattgttagcacctgcctcgaacaactcgtggatt
actgcaaattctcgtgcaaccggcattctcaaaggacgatcagggccagttgatcaaagc
cagaatcagaatacaagaagagaaaatgcttccatgtctggaagacagccgttggacact
tccagaaaacacatgttcttattttgtaataaggtttgtgtgataactgacgaagagatt
cgacgagacaaggaacagcatcgattggaaaggtcacaaattagcgcggaacgaaaactg
gagcacagaaaagctatgagacgacaatccagggctagacttctcagccgtctgcaaacg
gagtatgacaacaacgacgctacaacgctgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTCGTCAATCGCTGCAAATG 700 615 2698 Antisense
GATTATCGGTCAAAGGCTCCAACAC 260 429 2728 Antisense
GAATGCGGCTGCCTCAAAGTTTGCT 356 331 2784 Antisense
TCAAAGTTTGCTGCACCTCGTTGTC 131 629 2797 Antisense
CAGACTGCTTCCAAGTGACTCTAAC 359 205 2871 Antisense
ACTAAGCCATTGTTAGCACCTGCCT 611 99 2896 Antisense
CCTGCCTCGAACAACTCGTGGATTA 129 267 2914 Antisense
GCAAATTCTCGTGCAACCGGCATTC 695 317 2941 Antisense
GACAATCCAGGGCTAGACTTCTCAG 335 365 3200 Antisense
ACTTCTCAGCCGTCTGCAAACGGAG 42 103 3216 Antisense
CAACAACGACGCTACAACGCTGTTC 414 189 3246 Antisense
Sequence Source Affymetrix Proprietary Database