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[178489_at]

Description F36A2.7 /REP_DB=WormBase Gene ID /WP=CE09946 /TR=P90860 /GB=CAB03069.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 07      6grp_total > 51      4grp_total > 25      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8296
1 2 3 4 range
A 13728.1
(-3)
P 		16297.9
(-0.9)
P 		16987.2
(-0.4)
P 		21141
(3)
P 		7413
B 12904.3
(-3)
P 		14710.3
(0.4)
P 		14904.6
(0.7)
P 		16124.2
(3)
P 		3220
C 12844.8
(-3)
P 		14671.7
(-0.1)
P 		13890.3
(-1.3)
P 		16627.3
(3)
P 		3783
avr 13159.1
(-3) 		15226.6
(-0.4) 		15260.7
(-0.4) 		17964.2
(3) 		4805

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7527
1 2 3 4 5 6 range
A 16036.7
(3)
P 		14598.5
(0.8)
P 		15948.1
(2.9)
P 		15991
(2.9)
P 		12953.2
(-1.8)
P 		12142.8
(-3)
P 		3894
B 14201.8
(1.2)
P 		13141.8
(-0.1)
P 		15764
(3)
P 		14004.5
(0.9)
P 		12447.2
(-0.9)
P 		10625.1
(-3)
P 		5139
C 14067.1
(0.5)
P 		12798.7
(-0.5)
P 		17195.9
(3)
P 		15472.2
(1.6)
P 		13654.2
(0.2)
P 		9668.9
(-3)
P 		7527
avr 14768.5
(1.3) 		13513
(-0) 		16302.7
(3) 		15155.9
(1.7) 		13018.2
(-0.6) 		10812.3
(-3) 		5490
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2195
1 2 3 4 range
A 4998.4
(3)
P 		3537.8
(-1.6)
P 		4440.8
(1.2)
P 		3094.6
(-3)
P 		1904
B 4115.1
(3)
P 		3633.1
(-1.3)
P 		3453.7
(-2.8)
P 		3436.1
(-3)
P 		679
C 4252
(1.3)
P 		4218.2
(1.2)
P 		4841.2
(3)
P 		2803.6
(-3)
P 		2038
avr 4455.2
(3) 		3796.4
(0.1) 		4245.2
(2.1) 		3111.4
(-3) 		1344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2258
1 2 3 4 5 6 range
A 2956.2
(-3)
P 		5192
(3)
P 		3473.2
(-1.6)
P 		4055.7
(-0)
P 		3908.7
(-0.4)
P 		2956.4
(-3)
P 		2236
B 4941.5
(2.5)
P 		4374.4
(-0)
P 		3828
(-2.5)
P 		3709.3
(-3)
P 		5057.2
(3)
P 		3962
(-1.9)
P 		1348
C 5214.1
(3)
P 		3905.3
(-0.7)
P 		4376.6
(0.6)
P 		3111.5
(-3)
P 		4418.3
(0.7)
P 		3236.7
(-2.6)
P 		2103
avr 4370.6
(2.3) 		4490.6
(3) 		3892.6
(-0.2) 		3625.5
(-1.7) 		4461.4
(2.8) 		3385
(-3) 		1106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2177
Sequence Type Exemplar sequence
Representative Public ID F36A2.7 NCBI
Target Description F36A2.7 /REP_DB=WormBase Gene ID /WP=CE09946 /TR=P90860 /GB=CAB03069.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059982 NCBI Caenorhabditis elegans F36A2.7 (F36A2.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000004937 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8821887:8823009:1 11/11 None
F36A2.7.1 ENSEMBL cdna:known chromosome:CEL140:I:8821884:8823322:1 gene:F36A2.7 11/11 None
F36A2.7.2 ENSEMBL cdna:known chromosome:CEL140:I:8821886:8823322:1 gene:F36A2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004923 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8821817-8822940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A2.7
Entrez Gene 172692 Entrez gene
SwissProt P90860 EMBL-EBI
WormBase CE09946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03069 Hypothetical protein F36A2.7 [Caenorhabditis elegans] ref|NP_492383.1| F36A2.7 [Caenorhabditis elegans] 1.0E-94
blast CAE66979 Hypothetical protein CBG12375 [Caenorhabditis briggsae] 2.0E-85
blast CAE57640 Hypothetical protein CBG00625 [Caenorhabditis briggsae] 7.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492383.1 1 82-104
F36A2.7.1 1 82-104
F36A2.7.2 1 82-104
GENEFINDER00000004937 1 82-104
Sequence
Target Sequence 
>C. ELEGANS:178489_AT
ggtcaccaaaaacaccattgctcgcattgttcttgtcagaaatgcctcttctggactgac
cctcaagcacgaacaaacaatcaaaattaacgaccagcaaggattcttcaaataccagcg
cgacgtttcccgtgatactcgttactcaaacccagccaagccaggagatactgctgccag
attcatgttccgcaagctcggacacgcctacgagatctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCACCAAAAACACCATTGCTCGC 219 499 42 Antisense
ATTGCTCGCATTGTTCTTGTCAGAA 338 7 58 Antisense
CAGAAATGCCTCTTCTGGACTGACC 534 205 78 Antisense
CTGACCCTCAAGCACGAACAAACAA 695 237 97 Antisense
TTAACGACCAGCAAGGATTCTTCAA 97 685 128 Antisense
TTTCCCGTGATACTCGTTACTCAAA 168 669 167 Antisense
TCAAACCCAGCCAAGCCAGGAGATA 381 629 187 Antisense
GCCAGGAGATACTGCTGCCAGATTC 151 281 201 Antisense
GCTGCCAGATTCATGTTCCGCAAGC 410 297 214 Antisense
TCATGTTCCGCAAGCTCGGACACGC 187 623 224 Antisense
CTCGGACACGCCTACGAGATCTACC 46 233 238 Antisense
Sequence Source Affymetrix Proprietary Database