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[178488_at]

Description F19H6.3 /REP_DB=WormBase Gene ID /WP=CE03234 /TR=Q19604 /GB=CAA92167.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.4
(-1.7)
A 		3.3
(-2.1)
A 		3.1
(-3)
A 		4.5
(3)
A 		1
B 2.7
(-3)
A 		3.1
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		0
C 2.1
(-3)
A 		2.6
(-2.8)
A 		2
(-3)
A 		20.3
(3)
A 		18
avr 2.7
(-2.9) 		3
(-2.6) 		2.6
(-3) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.7
(3)
A 		2.3
(-3)
A 		3.4
(-1.5)
A 		4
(-0.7)
A 		3.3
(-1.6)
A 		2.5
(-2.7)
A 		4
B 2
(-2.7)
A 		1.8
(-3)
A 		2.2
(-2.4)
A 		3.9
(0.3)
A 		2.1
(-2.5)
A 		5.6
(3)
A 		4
C 2.4
(-2.8)
A 		2.6
(-2.7)
A 		19.7
(3)
A 		6.9
(-1.3)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		18
avr 3.7
(-1.5) 		2.2
(-3) 		8.4
(3) 		4.9
(-0.4) 		2.5
(-2.7) 		3.3
(-1.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.2
(3)
A 		0.7
(-3)
A 		0.8
(-1.8)
A 		0.7
(-3)
A 		1
B 0.9
(3)
A 		0.8
(1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0
C 0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		3.4
(3)
A 		3
avr 0.9
(-1.7) 		0.7
(-3) 		0.7
(-3) 		1.6
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.2
(3)
A 		0.8
(-1)
A 		0.7
(-2)
A 		1
(1)
A 		1
(1)
A 		0.6
(-3)
A 		1
B 0.7
(-2.3)
A 		0.6
(-2.6)
A 		0.5
(-3)
A 		1
(-1.1)
A 		0.8
(-1.9)
A 		2.1
(3)
A 		2
C 0.9
(-2.6)
A 		0.8
(-2.7)
A 		5
(3)
A 		1.4
(-1.9)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		4
avr 0.9
(-2.1) 		0.7
(-3) 		2.1
(3) 		1.1
(-1.3) 		0.8
(-2.6) 		1.1
(-1.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16284
Sequence Type Exemplar sequence
Representative Public ID F19H6.3 NCBI
Target Description F19H6.3 /REP_DB=WormBase Gene ID /WP=CE03234 /TR=Q19604 /GB=CAA92167.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077677 NCBI Caenorhabditis elegans F19H6.3 (F19H6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000003018 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12368175:12371342:-1 10/11 None
SNAP00000003014 ENSEMBL cdna:SNAP chromosome:CEL140:X:12368373:12371342:-1 10/11 None
F19H6.3 ENSEMBL cdna:known chromosome:CEL140:X:12367935:12371342:-1 gene:F19H6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12367934-12371342(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19H6.3
Entrez Gene 184698 Entrez gene
SwissProt Q19604 EMBL-EBI
WormBase CE03234 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92167 Hypothetical protein F19H6.3 [Caenorhabditis elegans] ref|NP_510078.1| F19H6.3 [Caenorhabditis elegans] 0.0
blast CAB02920 Hypothetical protein F11E6.7 [Caenorhabditis elegans] ref|NP_503112.1| F11E6.7 [Caenorhabditis elegans] 0.0
blast CAE57476 Hypothetical protein CBG00443 [Caenorhabditis briggsae] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:178488_AT
ttatctacttctactgtctatccacctgctgttcaaaaaaatgtgtccgaagtacaatct
cgtcaaaatttggcaccaatatttcgtggtggaccgaaacatttgaaaaaggcacaactg
agttcagaaatgcaattcgaacatgcgaatgaaattgaaaggtctttcttagaagataga
cgcattttgcatagaatctgtaccaatctctcacacgctcacacacaaaatcattggcca
ggtgaaaactcgtccaaacttctctccaatatcaacaaagcttcaatacttttcaagaat
ttggtacaaacacgtggtgctggcgactgggatggtatgaatttaaatgacggtgaatgg
tcaacagccgtaagcgatgtggcaactgatgttgatgctcttgtagcagtatacaaacgt
ttttcacgtcatcacacttcactcatggcgaataatcttccatggaaaagcatcatggaa
tgcataaacgaagcagcgtgtcttctgggaagtatctttctcgcgagagtacaagaaaaa
tcaacactttcagtgatattccccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCTACTTCTACTGTCTATCCAC 171 681 2158 Antisense
TGTGTCCGAAGTACAATCTCGTCAA 415 553 2199 Antisense
TAGAATCTGTACCAATCTCTCACAC 680 651 2349 Antisense
TGGCCAGGTGAAAACTCGTCCAAAC 255 545 2392 Antisense
CAAACACGTGGTGCTGGCGACTGGG 604 187 2464 Antisense
GTGAATGGTCAACAGCCGTAAGCGA 492 479 2510 Antisense
AACGTTTTTCACGTCATCACACTTC 595 143 2573 Antisense
TCATCACACTTCACTCATGGCGAAT 155 621 2586 Antisense
GAAGCAGCGTGTCTTCTGGGAAGTA 426 341 2647 Antisense
GGGAAGTATCTTTCTCGCGAGAGTA 418 493 2664 Antisense
AACACTTTCAGTGATATTCCCCATC 570 133 2700 Antisense
Sequence Source Affymetrix Proprietary Database