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[178487_at]

Description ZC482.7 /REP_DB=WormBase Gene ID /WP=CE16697 /TR=O18278 /GB=CAB07721.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 44.3
(-1.3)
A 		64.4
(3)
A 		36.3
(-3)
A 		60.5
(2.2)
A 		28
B 24.9
(-1)
A 		23.5
(-3)
A 		24.2
(-2)
A 		27.8
(3)
A 		4
C 15.1
(-3)
A 		38.8
(-1)
A 		18.5
(-2.7)
A 		86.1
(3)
A 		71
avr 28.1
(-2.7) 		42.2
(0) 		26.3
(-3) 		58.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.3
(-2.8)
A 		20.1
(-0.6)
A 		34.7
(2)
A 		6.3
(-3)
A 		40.2
(3)
A 		35.6
(2.2)
A 		34
B 17.7
(-1.9)
A 		34
(1.2)
A 		43.4
(3)
A 		12
(-3)
A 		15.9
(-2.3)
A 		18.3
(-1.8)
A 		31
C 24.5
(-0.8)
A 		21.1
(-1.4)
A 		15.1
(-2.6)
A 		45
(3)
A 		24.8
(-0.8)
A 		12.7
(-3)
A 		32
avr 16.5
(-3) 		25.1
(0.5) 		31.1
(3) 		21.1
(-1.1) 		27
(1.3) 		22.2
(-0.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 16.1
(3)
A 		14
(1.3)
A 		9.5
(-2.5)
A 		8.9
(-3)
A 		7
B 7.9
(3)
A 		5.8
(-2.5)
A 		5.6
(-3)
A 		5.9
(-2.2)
A 		2
C 5
(-3)
A 		11.2
(0.9)
A 		6.5
(-2.1)
A 		14.5
(3)
A 		10
avr 9.7
(1.8) 		10.3
(3) 		7.2
(-3) 		9.8
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-3)
A 		7.1
(0.2)
A 		7.6
(0.5)
A 		1.6
(-2.8)
A 		12.1
(3)
A 		8.7
(1.1)
A 		11
B 6.2
(-0.8)
A 		11.3
(3)
A 		10.5
(2.4)
A 		3.2
(-3)
A 		6.5
(-0.6)
A 		6.8
(-0.3)
A 		8
C 9.1
(3)
A 		6.4
(-0.1)
A 		3.8
(-3)
A 		9
(2.9)
A 		8
(1.8)
A 		4.2
(-2.5)
A 		5
avr 5.5
(-1.7) 		8.3
(2.2) 		7.3
(0.8) 		4.6
(-3) 		8.9
(3) 		6.6
(-0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6148
Sequence Type Exemplar sequence
Representative Public ID ZC482.7 NCBI
Target Description ZC482.7 /REP_DB=WormBase Gene ID /WP=CE16697 /TR=O18278 /GB=CAB07721.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067256 NCBI Caenorhabditis elegans ZC482.7 (ZC482.7) mRNA, complete cds. 11/11 None
ZC482.7 ENSEMBL cdna:known chromosome:CEL140:III:12750982:12753507:1 gene:ZC482.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004049 4/11 Cross Hyb Matching Probes None
SNAP00000004042 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12750977-12753503(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC482.7
Entrez Gene 191188 Entrez gene
SwissProt O18278 EMBL-EBI
WormBase CE16697 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07721 Hypothetical protein ZC482.7 [Caenorhabditis elegans] ref|NP_499657.1| ZC482.7 [Caenorhabditis elegans] 0.0
blast CAB07718 Hypothetical protein ZC482.4 [Caenorhabditis elegans] ref|NP_499660.2| ZC482.4 [Caenorhabditis elegans] 1.0E-107
blast AAB65879 Hypothetical protein F59D6.4 [Caenorhabditis elegans] ref|NP_503827.1| F59D6.4 [Caenorhabditis elegans] 8.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-25
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499657.1 2 2-24,342-361
ZC482.7 2 2-24,342-361
Sequence
Target Sequence 
>C. ELEGANS:178487_AT
gcttgacagtcgcagaagttgtacattatttcgaattaaataaactttctgtcgataatt
tccatgtgaaactttgtgatgaggaagactcgaaatatgttatatgtcacgctgaaccgc
tgaaaacattattgaacaattgtgaagtaattattggaaatttgataattgaagctggcg
atgagggttatatttcaaaattggattttaccaagtatctattcggagcattaataataa
ggaacactaatctaaaaaagattaaaactttgtttcacttgagccttatttgctctttcg
aggattctttgccacttattcaaatacattcaaacgtaaacttgaaagaagcagtgttgg
gtggaatagtcaatctgataaccggaggagaaagggttgcaatttttcaagataatcacc
ctgatttgtttaaatcaaaggaatgtgatttgttcgaccgaaataataaaacagattttt
tgaagaccctcgtcagtttgacatatatcggaggagactgtggagacgaaagagttaata
tcacattttcaaatgcaagttccctctccatattcttcgttatatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGACAGTCGCAGAAGTTGTACA 346 305 476 Antisense
AACTTTCTGTCGATAATTTCCATGT 418 139 518 Antisense
TATATGTCACGCTGAACCGCTGAAA 86 659 576 Antisense
GAAGCTGGCGATGAGGGTTATATTT 236 343 646 Antisense
TTACCAAGTATCTATTCGGAGCATT 276 681 683 Antisense
AACTTTGTTTCACTTGAGCCTTATT 528 139 741 Antisense
AGCCTTATTTGCTCTTTCGAGGATT 93 85 757 Antisense
TCGAGGATTCTTTGCCACTTATTCA 465 601 773 Antisense
TTGAAGACCCTCGTCAGTTTGACAT 291 681 955 Antisense
ATTTTCAAATGCAAGTTCCCTCTCC 243 15 1020 Antisense
CCTCTCCATATTCTTCGTTATATCA 474 267 1038 Antisense
Sequence Source Affymetrix Proprietary Database