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[178485_at]

Description F14F7.5 /REP_DB=WormBase Gene ID /WP=CE15825 /TR=O45360 /GB=CAB04114.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 4.7
(-2.6)
A 		2.8
(-3)
A 		33.6
(3)
A 		5.1
(-2.6)
A 		31
B 28.9
(3)
A 		8.4
(-2.1)
A 		4.7
(-3)
A 		9.1
(-1.9)
A 		24
C 27.8
(0.3)
A 		5.6
(-3)
A 		6.6
(-2.9)
A 		46.2
(3)
A 		41
avr 20.5
(3) 		5.6
(-3) 		15
(0.8) 		20.1
(2.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 30.8
(3)
A 		7.8
(-1.8)
A 		5.7
(-2.2)
A 		5.5
(-2.3)
A 		20.4
(0.8)
A 		2
(-3)
A 		29
B 6.2
(-2.6)
A 		19.7
(0.4)
A 		17.4
(-0.1)
A 		31.5
(3)
A 		4.6
(-2.9)
A 		4.2
(-3)
A 		27
C 33.8
(1.3)
A 		45.9
(3)
A 		5.5
(-2.7)
A 		8.8
(-2.2)
A 		3.1
(-3)
A 		7
(-2.5)
A 		43
avr 23.6
(2.7) 		24.5
(3) 		9.5
(-1.5) 		15.3
(0.3) 		9.4
(-1.5) 		4.4
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.7
(-2.2)
A 		0.6
(-3)
A 		8.8
(3)
A 		0.7
(-2.9)
A 		8
B 9.2
(3)
A 		2.1
(-2.3)
A 		1.1
(-3)
A 		1.9
(-2.4)
A 		8
C 9.2
(3)
A 		1.6
(-3)
A 		2.3
(-2.4)
A 		7.8
(1.9)
A 		8
avr 6.7
(3) 		1.4
(-3) 		4.1
(0.1) 		3.5
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.7
(2.6)
A 		2.8
(-0.5)
A 		1.2
(-2.3)
A 		1.4
(-2)
A 		6.1
(3)
A 		0.5
(-3)
A 		6
B 2.2
(-2.5)
A 		6.6
(1.4)
A 		4.2
(-0.7)
A 		8.4
(3)
A 		1.8
(-2.8)
A 		1.6
(-3)
A 		7
C 12.5
(2.3)
A 		14
(3)
A 		1.4
(-2.8)
A 		1.8
(-2.6)
A 		1
(-3)
A 		2.3
(-2.4)
A 		13
avr 6.8
(2) 		7.8
(3) 		2.3
(-2.2) 		3.9
(-0.7) 		3
(-1.6) 		1.5
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7847
Sequence Type Exemplar sequence
Representative Public ID F14F7.5 NCBI
Target Description F14F7.5 /REP_DB=WormBase Gene ID /WP=CE15825 /TR=O45360 /GB=CAB04114.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067306 NCBI Caenorhabditis elegans F14F7.5 (F14F7.5) mRNA, complete cds. 11/11 None
SNAP00000006439 ENSEMBL cdna:SNAP chromosome:CEL140:III:13034327:13035860:1 11/11 None
GENEFINDER00000006445 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13034327:13035860:1 11/11 None
F14F7.5 ENSEMBL cdna:known chromosome:CEL140:III:13030436:13035859:1 gene:F14F7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13030782-13035795(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F7.5
Entrez Gene 176726 Entrez gene
SwissProt O45360 EMBL-EBI
WormBase CE15825 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04465 Hypothetical protein F14F7.5 [Caenorhabditis elegans] emb|CAB04114.1| Hypothetical protein F14F7.5 [Caenorhabditis elegans] ref|NP_499707.1| F14F7.5 [Caenorhabditis elegans] 0.0
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 4.0E-71
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 9.0E-46
blast CAB04465 Hypothetical protein F14F7.5 [Caenorhabditis elegans] emb|CAB04114.1| Hypothetical protein F14F7.5 [Caenorhabditis elegans] ref|NP_499707.1| F14F7.5 [Caenorhabditis elegans] 3.0E-44
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 8.0E-9
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.6E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000006439 1 165-187
GENEFINDER00000006445 1 165-187
Sequence
Target Sequence 
>C. ELEGANS:178485_AT
gatacgactggcaagttttccggaattgtcaatgccctggaggttattacaaatttggac
ttggactttgaaaagtatgatattaaatcagcttcttcttcactgaaagcactggatgcg
tttttcaataaatacgaagcaaccttatttccaccaactactacgattcctccagctaca
cctctatcatcacctgctccttcaaatcaatctccgccatctcaacctcaaccaggaccc
cgaggatcctcgccaccagcaccgtcggcaccttcggcacctgaaactgatacgaatagt
cttgcattggtcgacttaaccgattcacctgctgatccgaccccggaagtctcgggattc
atgtggttcattttgcaaaacggaaagtgcaacgcgtttgggagattttcaatcaaaaaa
tttagtacggaaaacgctcagcagcaaattcaggatatcatatattttattctttgtgat
gggcactgctggtaccgtgtttttcgtgaagcggttcttgaagacgggtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACGACTGGCAAGTTTTCCGGAA 439 423 2185 Antisense
GGAATTGTCAATGCCCTGGAGGTTA 241 533 2206 Antisense
AGCTTCTTCTTCACTGAAAGCACTG 38 79 2274 Antisense
CCTTATTTCCACCAACTACTACGAT 55 267 2327 Antisense
CACCTTCGGCACCTGAAACTGATAC 617 201 2453 Antisense
GTCTTGCATTGGTCGACTTAACCGA 276 467 2483 Antisense
TCGACTTAACCGATTCACCTGCTGA 457 601 2495 Antisense
AAGTCTCGGGATTCATGTGGTTCAT 676 157 2531 Antisense
TTTGTGATGGGCACTGCTGGTACCG 328 667 2657 Antisense
GCTGGTACCGTGTTTTTCGTGAAGC 396 295 2672 Antisense
GAAGCGGTTCTTGAAGACGGGTCAA 325 341 2692 Antisense
Sequence Source Affymetrix Proprietary Database