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[178484_at]

Description R148.1 /REP_DB=WormBase Gene ID /WP=CE12848 /TR=O17269 /GB=AAB71036.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 22      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 73.5
(3)
A 		11.7
(-2.4)
A 		4.2
(-3)
A 		73.3
(3)
A 		69
B 38.8
(0.6)
A 		6.5
(-2.8)
A 		5
(-3)
A 		60.9
(3)
A 		56
C 53.8
(3)
A 		7.6
(-2.4)
A 		2.6
(-3)
A 		48.8
(2.4)
A 		51
avr 55.4
(2.4) 		8.6
(-2.5) 		3.9
(-3) 		61
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 9.1
(-2.8)
A 		6.6
(-3)
A 		15.7
(-2.1)
A 		37.4
(0.1)
A 		66.6
(3)
A 		51.1
(1.5)
A 		60
B 5
(-3)
A 		8.2
(-2.4)
A 		21.6
(0.1)
A 		8.4
(-2.4)
A 		37.3
(3)
A 		6.1
(-2.8)
A 		32
C 28.8
(3)
A 		10.1
(-2.1)
A 		14.5
(-0.9)
A 		7.6
(-2.8)
A 		6.7
(-3)
A 		10.8
(-1.9)
A 		22
avr 14.3
(-1.7) 		8.3
(-3) 		17.3
(-1.1) 		17.8
(-1) 		36.9
(3) 		22.7
(0) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.8
(3)
A 		2.5
(-2.7)
A 		1.1
(-3)
A 		10.7
(-0.8)
A 		26
B 12.4
(2.7)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		13
(3)
A 		12
C 17.8
(3)
A 		2.2
(-2.5)
A 		0.9
(-3)
A 		8.2
(-0.4)
A 		17
avr 19
(3) 		2.1
(-2.7) 		1.1
(-3) 		10.6
(0.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.4
(-2.8)
A 		3.4
(-2.4)
A 		9.5
(-0.5)
A 		20.1
(3)
A 		12.4
(0.5)
A 		18
B 1.7
(-3)
A 		2.7
(-2.6)
A 		5.2
(-1.4)
A 		2.2
(-2.8)
A 		15.2
(3)
A 		2.3
(-2.7)
A 		14
C 10.7
(3)
A 		3.1
(-2)
A 		3.7
(-1.6)
A 		1.5
(-3)
A 		2.2
(-2.5)
A 		3.6
(-1.6)
A 		9
avr 4.7
(-1.8) 		2.7
(-3) 		4.1
(-2.1) 		4.4
(-2) 		12.5
(3) 		6.1
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6278
Sequence Type Exemplar sequence
Representative Public ID R148.1 NCBI
Target Description R148.1 /REP_DB=WormBase Gene ID /WP=CE12848 /TR=O17269 /GB=AAB71036.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065268 NCBI Caenorhabditis elegans X-BoX promoter element regulated family member (xbx-7) (xbx-7) mRNA, complete cds. 11/11 None
SNAP00000030366 ENSEMBL cdna:SNAP chromosome:CEL140:III:3186689:3191208:1 9/11 None
GENEFINDER00000030370 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3186689:3191208:1 9/11 None
R148.1 ENSEMBL cdna:known chromosome:CEL140:III:3186689:3191360:1 gene:R148.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3186688-3191360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol xbx-7
Ensembl R148.1
Entrez Gene 187903 Entrez gene
SwissProt O17269 EMBL-EBI
WormBase CE12848 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71036 Hypothetical protein R148.1 [Caenorhabditis elegans] ref|NP_497669.1| X-BoX promoter element regulated family member (xbx-7) [Caenorhabditis elegans] 0.0
blast CAE74683 Hypothetical protein CBG22495 [Caenorhabditis briggsae] 1.0E-168
blast CAE74683 Hypothetical protein CBG22495 [Caenorhabditis briggsae] 1.0E-132
blast XP_787637 PREDICTED: similar to CG15730-PA [Strongylocentrotus purpuratus] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178484_AT
aggaataccgatttttgtccgctgcttatgctgagatttatggcggtggactactgggga
cggcagtatattgctggatatggatccggttatgttagtttgacacccggaaaatctctg
tcgaaaatccatctctggcgaccaattagccataattctctttacgaaatgtttgttggc
caggcaatcgatatcgattattttggaactccaaagagctctctggaacgagttggccga
gacgggcaaccttctggaataattgcgatcagatttctaccaacgtataataaaagtgct
aatggaattcgaagaagcccgttcaaaactgattatcgcacgagcgatcaacaaaaagaa
gataaaaatgtgaaaagcgctgctattttttgttttgtatttttattttatttttctgaa
aatctgaaaattcttgtactggataaatttgttcaaattttgttttgctgcaaatttgct
gctccgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAATACCGATTTTTGTCCGCTGC 303 55 874 Antisense
TGTCCGCTGCTTATGCTGAGATTTA 360 557 889 Antisense
TTTATGGCGGTGGACTACTGGGGAC 359 671 910 Antisense
TAGTTTGACACCCGGAAAATCTCTG 323 645 969 Antisense
AAATCTCTGTCGAAAATCCATCTCT 30 119 985 Antisense
AATCCATCTCTGGCGACCAATTAGC 370 167 999 Antisense
TGTTGGCCAGGCAATCGATATCGAT 315 555 1047 Antisense
GAGCTCTCTGGAACGAGTTGGCCGA 12 389 1089 Antisense
GAGACGGGCAACCTTCTGGAATAAT 667 391 1112 Antisense
ATTGCGATCAGATTTCTACCAACGT 423 5 1135 Antisense
TTGCTGCAAATTTGCTGCTCCGCGA 659 701 1338 Antisense
Sequence Source Affymetrix Proprietary Database