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[178483_at]

Description C14A4.1 /REP_DB=WormBase Gene ID /WP=CE02138 /TR=Q17949 /GB=CAA90105.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 47      6grp_total > 57      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12942
1 2 3 4 range
A 3473.2
(-2.2)
P 		1722.9
(-3)
P 		1998.9
(-2.9)
P 		14180.8
(3)
P 		12458
B 2831.6
(-2.5)
P 		2667.6
(-2.6)
P 		1936.4
(-3)
P 		13578.6
(3)
P 		11642
C 3636.9
(-2.2)
P 		1934
(-3)
P 		2273.5
(-2.8)
P 		14664.6
(3)
P 		12731
avr 3313.9
(-2.4) 		2108.2
(-3) 		2069.6
(-3) 		14141.3
(3) 		12072

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2357
1 2 3 4 5 6 range
A 3354
(3)
P 		2347.6
(-3)
P 		3342.1
(2.9)
P 		2806.3
(-0.3)
P 		2748.2
(-0.6)
P 		2869.2
(0.1)
P 		1006
B 3583.8
(0.3)
P 		3106.8
(-1.1)
P 		2474.5
(-3)
P 		3270.8
(-0.6)
P 		2925.7
(-1.7)
P 		4501.5
(3)
P 		2027
C 2446.2
(-2.5)
P 		3142.3
(-0.8)
P 		2268.4
(-3)
P 		3223.7
(-0.6)
P 		2340.3
(-2.8)
P 		4625.7
(3)
P 		2357
avr 3128
(-0.9) 		2865.6
(-2.1) 		2695
(-2.9) 		3100.3
(-1.1) 		2671.4
(-3) 		3998.8
(3) 		1327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2520
1 2 3 4 range
A 1264.6
(0.1)
P 		374
(-3)
P 		522.6
(-2.5)
P 		2075.8
(3)
P 		1702
B 903
(-1.9)
P 		658.8
(-2.5)
P 		448.7
(-3)
P 		2893.6
(3)
P 		2445
C 1203.9
(-1)
P 		556
(-3)
P 		792.4
(-2.3)
P 		2472.7
(3)
P 		1917
avr 1123.8
(-1.2) 		529.6
(-3) 		587.9
(-2.8) 		2480.7
(3) 		1951

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1101
1 2 3 4 5 6 range
A 618.3
(-3)
P 		834.9
(3)
P 		727.8
(0)
P 		711.7
(-0.4)
P 		829.3
(2.8)
P 		698.6
(-0.8)
P 		217
B 1247
(0.6)
P 		1034.1
(-0.6)
P 		600.9
(-3)
P 		866.3
(-1.5)
P 		1188.7
(0.3)
P 		1678.6
(3)
P 		1078
C 906.7
(-1)
P 		958.8
(-0.6)
P 		577.4
(-3)
P 		648.3
(-2.6)
P 		757.3
(-1.9)
P 		1548.5
(3)
P 		971
avr 924
(-0.4) 		942.6
(-0.3) 		635.4
(-3) 		742.1
(-2) 		925.1
(-0.4) 		1308.6
(3) 		673
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3752
Sequence Type Exemplar sequence
Representative Public ID C14A4.1 NCBI
Target Description C14A4.1 /REP_DB=WormBase Gene ID /WP=CE02138 /TR=Q17949 /GB=CAA90105.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063878 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-242) (tag-242) mRNA, complete cds. 11/11 None
SNAP00000002482 ENSEMBL cdna:SNAP chromosome:CEL140:II:10579889:10580879:1 11/11 None
GENEFINDER00000002506 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10579889:10580879:1 11/11 None
C14A4.1.1 ENSEMBL cdna:known chromosome:CEL140:II:10579864:10580954:1 gene:C14A4.1 11/11 None
C14A4.1.2 ENSEMBL cdna:known chromosome:CEL140:II:10579866:10580954:1 gene:C14A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10579885-10580876(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-242
Ensembl C14A4.1
Entrez Gene 3565578 Entrez gene
SwissProt Q17949 EMBL-EBI
WormBase CE02138 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251578_AT PBS lyase HEAT-like repeat-containing protein at
CANINE_2:CFA.16291.1.S1_AT similar to HEAT-like (PBS lyase) repeat containing 1 cfa
CANINE_2:CFAAFFX.29331.1.S1_AT similar to HEAT-like (PBS lyase) repeat containing 1 cfa
DROSOPHILA_2:1628764_AT dm
DROSGENOME1:142561_AT dm
CHICKEN:GGAAFFX.12844.1.S1_S_AT HEAT-like (PBS lyase) repeat containing 1 gga
CHICKEN:GGA.7510.1.S1_AT HEAT-like (PBS lyase) repeat containing 1 gga
CHICKEN:GGAAFFX.12844.1.A1_AT HEAT-like (PBS lyase) repeat containing 1 gga
HG-U133A:208141_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U133_PLUS_2:208141_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U133A_2:208141_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
U133_X3P:G13775227_3P_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U95AV2:33176_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U133A_2:213949_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U133_PLUS_2:213949_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U133A:213949_S_AT HEAT-like (PBS lyase) repeat containing 1 hs
HG-U95AV2:33177_AT HEAT-like (PBS lyase) repeat containing 1 hs
HU35KSUBA:AA422159_AT HEAT-like (PBS lyase) repeat containing 1 hs
HU35KSUBC:RC_AA421864_AT HEAT-like (PBS lyase) repeat containing 1 hs
U133_X3P:HS.91103.1.A1_3P_A_AT HEAT-like (PBS lyase) repeat containing 1 hs
MOE430A:1417322_AT HEAT-like (PBS lyase) repeat containing 1 mm
MOUSE430A_2:1417322_AT HEAT-like (PBS lyase) repeat containing 1 mm
MOUSE430_2:1417322_AT HEAT-like (PBS lyase) repeat containing 1 mm
MOUSE430A_2:1436402_AT HEAT-like (PBS lyase) repeat containing 1 mm
MOE430A:1436402_AT HEAT-like (PBS lyase) repeat containing 1 mm
MOUSE430_2:1436402_AT HEAT-like (PBS lyase) repeat containing 1 mm
MU11KSUBA:AA000750_S_AT HEAT-like (PBS lyase) repeat containing 1 mm
MG-U74AV2:99078_AT HEAT-like (PBS lyase) repeat containing 1 mm
MG-U74CV2:170932_AT HEAT-like (PBS lyase) repeat containing 1 mm
MU19KSUBB:TC31817_AT HEAT-like (PBS lyase) repeat containing 1 (Hlrc1), mRNA mm
RAE230A:1372677_AT similar to RIKEN cDNA 1110033C18 (predicted) rn
RAT230_2:1372677_AT similar to RIKEN cDNA 1110033C18 (predicted) rn
YEAST_2:1775342_AT Protein with a possible role in microtubule function; complements S. pombe mmd1 mutation affecting mitochondrial distribution although not required for this process in S. cerevisiae; binds to Hyp2p (eIF5A); contains HEAT-like repeats Sc
Protein Similarities
Method ID Description E-Value
blast CAA90105 Hypothetical protein C14A4.1 [Caenorhabditis elegans] ref|NP_496279.1| Temporarily Assigned Gene name family member (tag-242) [Caenorhabditis elegans] 1.0E-169
blast AAH46086 HEAT-like (PBS lyase) repeat containing 1 [Danio rerio] ref|NP_955857.1| HEAT-like (PBS lyase) repeat containing 1 [Danio rerio] 5.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR004155 EMBL-EBI PBS lyase HEAT-like repeat 1.3E-4
Pfam IPR004155 EMBL-EBI PBS lyase HEAT-like repeat 1.5E-5
Pfam IPR004155 EMBL-EBI PBS lyase HEAT-like repeat 8.6E-6
Pfam IPR004155 EMBL-EBI PBS lyase HEAT-like repeat 0.0023
Pfam IPR004155 EMBL-EBI PBS lyase HEAT-like repeat 0.01
Pfam IPR004155 EMBL-EBI PBS lyase HEAT-like repeat 8.8E-7
Sequence
Target Sequence 
>C. ELEGANS:178483_AT
aatggtccgccatgaagccggtgaagcgttgggagcaattgctgatccttcagtcaaaga
tgtcctccgaaaatatgcacaagatccgtgtccagaagtttccgagacatgccaaattgc
attaggaagggtggaatgggttgaaaaaagtggaaaggataccaacagcccttatgatag
cgttgatccaacaccatcagcttcaacatccgacgtcgaagagctcgcagccactctgat
cgacgcttcacttccacttttcgacagatatcgtgcgatgttcagtctaagaaacattaa
gacagataaatccatcaaagctcttgctcaaggtctctactgtgaagatagtgctttgtt
ccgtcacgaagtcgcatacgttttaggacaacttcagtcgcctgttgccactcaagaatt
gaaggatcgtcttctactgtcaactgaaaattgcatggtccgtcacgaatgtgctgaagc
tcttggagcaattgccaacgaagaatgtacggagattttgaagcaatacgtcaatgatga
ggagcgtgttgttcgagaaagctgcgaagttgccttggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTCCGCCATGAAGCCGGTGAA 80 161 282 Antisense
GATCCTTCAGTCAAAGATGTCCTCC 46 417 325 Antisense
GATCCGTGTCCAGAAGTTTCCGAGA 665 413 364 Antisense
GGATACCAACAGCCCTTATGATAGC 387 511 438 Antisense
TCAGCTTCAACATCCGACGTCGAAG 96 625 478 Antisense
TTCACTTCCACTTTTCGACAGATAT 420 687 528 Antisense
AAGCTCTTGCTCAAGGTCTCTACTG 451 149 599 Antisense
TGCTTTGTTCCGTCACGAAGTCGCA 68 579 633 Antisense
TCGCCTGTTGCCACTCAAGAATTGA 612 597 679 Antisense
GCATGGTCCGTCACGAATGTGCTGA 613 309 734 Antisense
GAAAGCTGCGAAGTTGCCTTGGATA 628 357 838 Antisense
Sequence Source Affymetrix Proprietary Database