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[178481_at]

Description F09E8.1 /REP_DB=WormBase Gene ID /WP=CE05578 /TR=Q19268 /GB=CAA98056.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 17.6
(-3)
A 		56.3
(3)
A 		40.8
(0.6)
A 		26.9
(-1.6)
A 		39
B 19.5
(-2.6)
A 		29.1
(0.7)
A 		18.3
(-3)
A 		35.6
(3)
A 		17
C 18.1
(-3)
A 		72.4
(3)
A 		27.5
(-2)
A 		62.2
(1.9)
A 		54
avr 18.4
(-3) 		52.6
(3) 		28.9
(-1.2) 		41.6
(1.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 20.3
(-2.5)
A 		25.8
(-1.5)
A 		21.7
(-2.2)
A 		49.6
(3)
A 		21.3
(-2.3)
A 		17.6
(-3)
A 		32
B 21.1
(-2.4)
A 		29.7
(-1.9)
A 		108.9
(3)
A 		12.8
(-2.9)
A 		25.3
(-2.2)
A 		11.8
(-3)
A 		97
C 14
(-3)
A 		90.9
(3)
A 		30.2
(-1.7)
A 		22.9
(-2.3)
A 		18.1
(-2.7)
A 		18
(-2.7)
A 		77
avr 18.5
(-2.6) 		48.8
(2.2) 		53.6
(3) 		28.4
(-1) 		21.6
(-2.1) 		15.8
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.4
(-1.2)
A 		12.2
(3)
A 		10.7
(1.9)
A 		3.9
(-3)
A 		8
B 6.2
(0.5)
A 		7.2
(2.3)
A 		4.2
(-3)
A 		7.6
(3)
A 		3
C 6
(-3)
A 		20.8
(3)
A 		9.6
(-1.5)
A 		10.5
(-1.2)
A 		15
avr 6.2
(-3) 		13.4
(3) 		8.2
(-1.3) 		7.3
(-2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.7
(-3)
A 		9.2
(0.7)
A 		4.7
(-2.3)
A 		12.6
(3)
A 		6.4
(-1.2)
A 		4.3
(-2.6)
A 		9
B 7.4
(-2)
A 		9.9
(-1.3)
A 		26.4
(3)
A 		3.4
(-3)
A 		10.3
(-1.2)
A 		4.4
(-2.7)
A 		23
C 5.2
(-2.8)
A 		27.7
(3)
A 		7.7
(-2.2)
A 		4.6
(-3)
A 		5.9
(-2.7)
A 		6
(-2.6)
A 		23
avr 5.4
(-2.7) 		15.6
(3) 		12.9
(1.5) 		6.9
(-1.9) 		7.5
(-1.5) 		4.9
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8639
Sequence Type Exemplar sequence
Representative Public ID F09E8.1 NCBI
Target Description F09E8.1 /REP_DB=WormBase Gene ID /WP=CE05578 /TR=Q19268 /GB=CAA98056.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070128 NCBI Caenorhabditis elegans F09E8.1 (F09E8.1) mRNA, complete cds. 11/11 None
SNAP00000017196 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13141355:13141989:-1 9/11 None
GENEFINDER00000017206 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13138966:13142429:-1 11/11 None
F09E8.1 ENSEMBL cdna:known chromosome:CEL140:IV:13141355:13142324:-1 gene:F09E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13141360-13142330(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E8.1
Entrez Gene 184245 Entrez gene
SwissProt Q19268 EMBL-EBI
WormBase CE05578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98056 Hypothetical protein F09E8.1 [Caenorhabditis elegans] ref|NP_502529.1| F09E8.1 [Caenorhabditis elegans] 1.0E-147
blast CAA98056 Hypothetical protein F09E8.1 [Caenorhabditis elegans] ref|NP_502529.1| F09E8.1 [Caenorhabditis elegans] 1.0E-145
blast CAA98056 Hypothetical protein F09E8.1 [Caenorhabditis elegans] ref|NP_502529.1| F09E8.1 [Caenorhabditis elegans] 1.0E-110
blast CAE58650 Hypothetical protein CBG01818 [Caenorhabditis briggsae] 2.0E-83
blast CAE58650 Hypothetical protein CBG01818 [Caenorhabditis briggsae] 8.0E-77
blast CAE58650 Hypothetical protein CBG01818 [Caenorhabditis briggsae] 4.0E-63
blast CAE67232 Hypothetical protein CBG12671 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 2.2E-47
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 2.2E-47
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 2.2E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017206 1 280-302
Sequence
Target Sequence 
>C. ELEGANS:178481_AT
gtatgaatgtcaccgggcttagcgaaaagagatgtgtcaaggataccaaacaaatctgca
ttggcggcatgccggacacccctgtcaaaccttgtaaccgatcaagagattgtacagcat
ccttggagagatacagtggctggtgtgatcttgagaccaaattttgctgcaatgttgacc
caaaagccgctgattcgccgttttgtcctgacagaataactccattgtatggccaagaaa
agtgtaaagacgtcgaaaagggaatggtgtattctggaagtagtgatcaacgtggtggcc
tctgttacaaggggtatagctgcccaccaaaaataactcgcccaaccgacctgacattcg
gaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGAATGTCACCGGGCTTAGCGA 90 455 128 Antisense
AAATCTGCATTGGCGGCATGCCGGA 511 117 179 Antisense
CCCTGTCAAACCTTGTAACCGATCA 415 235 207 Antisense
GAGATTGTACAGCATCCTTGGAGAG 402 397 233 Antisense
TTGACCCAAAAGCCGCTGATTCGCC 358 703 302 Antisense
ATTCGCCGTTTTGTCCTGACAGAAT 477 7 320 Antisense
AGTAGTGATCAACGTGGTGGCCTCT 75 61 406 Antisense
GTGGTGGCCTCTGTTACAAGGGGTA 118 1 419 Antisense
TACAAGGGGTATAGCTGCCCACCAA 702 639 433 Antisense
TGCCCACCAAAAATAACTCGCCCAA 619 583 448 Antisense
GCCCAACCGACCTGACATTCGGAAG 135 283 467 Antisense
Sequence Source Affymetrix Proprietary Database