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[178480_at]

Description C38D9.8 /REP_DB=WormBase Gene ID /WP=CE24836 /TR=Q9U3N3 /GB=CAB63435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 16.4
(-2.3)
A 		7.8
(-3)
A 		15.4
(-2.4)
A 		79.7
(3)
A 		72
B 47.1
(2.7)
A 		17.6
(-3)
A 		46.1
(2.5)
A 		48.5
(3)
A 		31
C 2.3
(-3)
A 		53.1
(3)
A 		27.1
(-0.1)
A 		19.2
(-1)
A 		51
avr 21.9
(-3) 		26.2
(-2.1) 		29.5
(-1.3) 		49.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 54.8
(3)
A 		12.7
(-1.9)
A 		9.8
(-2.2)
A 		6.1
(-2.7)
A 		46.9
(2.1)
A 		3.2
(-3)
A 		52
B 19
(0.1)
A 		32.2
(2.5)
A 		3.7
(-2.7)
A 		19.3
(0.2)
A 		34.7
(3)
A 		1.9
(-3)
A 		33
C 17.4
(-2.7)
A 		30.4
(-0)
A 		45.1
(3)
A 		32.1
(0.3)
A 		20
(-2.2)
A 		16.1
(-3)
A 		29
avr 30.4
(2.2) 		25.1
(1) 		19.5
(-0.2) 		19.2
(-0.3) 		33.9
(3) 		7.1
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6
(-0.4)
A 		1.7
(-3)
A 		4
(-1.6)
A 		11.7
(3)
A 		10
B 15
(3)
A 		4.4
(-3)
A 		10.7
(0.6)
A 		10.3
(0.3)
A 		11
C 0.7
(-3)
A 		15.3
(3)
A 		9.5
(0.6)
A 		3.2
(-2)
A 		15
avr 7.2
(-2.5) 		7.1
(-3) 		8.1
(1.6) 		8.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.1
(1.2)
A 		4.5
(-1.3)
A 		2.1
(-2.4)
A 		1.5
(-2.7)
A 		14.1
(3)
A 		0.8
(-3)
A 		13
B 6.6
(-0.4)
A 		10.7
(1.5)
A 		0.9
(-2.9)
A 		5.1
(-1)
A 		14.1
(3)
A 		0.7
(-3)
A 		13
C 6.4
(-2)
A 		9.3
(0.8)
A 		11.5
(3)
A 		6.5
(-1.9)
A 		6.5
(-1.9)
A 		5.4
(-3)
A 		6
avr 7.7
(0.5) 		8.2
(0.8) 		4.8
(-1.4) 		4.4
(-1.6) 		11.6
(3) 		2.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13668
Sequence Type Exemplar sequence
Representative Public ID C38D9.8 NCBI
Target Description C38D9.8 /REP_DB=WormBase Gene ID /WP=CE24836 /TR=Q9U3N3 /GB=CAB63435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075045 NCBI Caenorhabditis elegans C38D9.8 (C38D9.8) mRNA, complete cds. 11/11 None
SNAP00000039583 ENSEMBL cdna:SNAP chromosome:CEL140:V:17551229:17555392:-1 11/11 None
GENEFINDER00000039598 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17554082:17555392:-1 11/11 None
C38D9.8 ENSEMBL cdna:known chromosome:CEL140:V:17554082:17555392:-1 gene:C38D9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17554081-17555392(-) 99.81 100.0
chrV:17329144-17330498(-) 93.14 93.33
Public Domain and Genome References
Gene Title
Ensembl C38D9.8
Entrez Gene 183319 Entrez gene
SwissProt Q9U3N3 EMBL-EBI
WormBase CE24836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63435 Hypothetical protein C38D9.8 [Caenorhabditis elegans] ref|NP_507446.1| C38D9.8 [Caenorhabditis elegans] 0.0
blast CAB07200 Hypothetical protein F31E9.4 [Caenorhabditis elegans] ref|NP_507386.1| F31E9.4 [Caenorhabditis elegans] 1.0E-173
blast CAA16370 Hypothetical protein Y44A6C.2 [Caenorhabditis elegans] ref|NP_508001.1| Y44A6C.2 [Caenorhabditis elegans] 3.0E-45
Sequence
Target Sequence 
>C. ELEGANS:178480_AT
gatgagttggtggagacgatcagcgtcgagaaagggatcgtgttgtctggagaagcctgg
agcagcagtgataagatctacaacgtggactatttatttgtgggtcactctggtaacatg
gctctcacggatcttctccgattcaacaatcggatcgtttttctggatcgtgtttcaatt
tccaaccataccatccgcaattttctgcaagttttgaagaaatccaatagtcaactggaa
gttctaacgattcgagatagttgggaaggaagttgggatccaattgtagtacttgaaggg
ctcaacgcgcaggaatggagcccagagcaccggccacaaaagttctcccttaagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGTTGGTGGAGACGATCAGCG 118 411 445 Antisense
GGTGGAGACGATCAGCGTCGAGAAA 601 499 453 Antisense
GAGAAAGGGATCGTGTTGTCTGGAG 73 393 472 Antisense
GTCTGGAGAAGCCTGGAGCAGCAGT 631 471 489 Antisense
GTGGACTATTTATTTGTGGGTCACT 325 491 529 Antisense
ATTTATTTGTGGGTCACTCTGGTAA 558 15 536 Antisense
GTTTCAATTTCCAACCATACCATCC 499 449 616 Antisense
CAACCATACCATCCGCAATTTTCTG 282 187 627 Antisense
ATCCGCAATTTTCTGCAAGTTTTGA 43 39 637 Antisense
ATTGTAGTACTTGAAGGGCTCAACG 313 5 727 Antisense
GCCACAAAAGTTCTCCCTTAAGTCA 258 265 777 Antisense
Sequence Source Affymetrix Proprietary Database