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[178479_s_at]

Description K08F8.6 /REP_DB=WormBase Gene ID /WP=CE11940 /TR=Q93442 /GB=CAA92667.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 10      6grp_total > 26      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1892
1 2 3 4 range
A 2416.1
(3)
P 		807.7
(-2.6)
P 		707.3
(-3)
P 		1300
(-0.9)
P 		1709
B 2339.4
(3)
P 		1005.9
(-2.7)
P 		946.5
(-3)
P 		1547.8
(-0.4)
P 		1393
C 2599.3
(3)
P 		907.4
(-3)
P 		961
(-2.8)
P 		1191.7
(-2)
P 		1692
avr 2451.6
(3) 		907
(-2.9) 		871.6
(-3) 		1346.5
(-1.2) 		1580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1699
1 2 3 4 5 6 range
A 2003.5
(2.3)
P 		2188.9
(3)
P 		845.9
(-2.4)
P 		1192
(-1)
P 		683.9
(-3)
P 		1164.7
(-1.1)
P 		1505
B 1946.6
(3)
P 		1457
(1)
P 		866.9
(-1.4)
P 		1288.2
(0.3)
P 		490.4
(-3)
P 		1101.8
(-0.5)
P 		1456
C 1787.7
(3)
P 		1535.9
(1.6)
P 		1321.3
(0.4)
P 		871.3
(-2.2)
P 		721.1
(-3)
P 		953.6
(-1.7)
P 		1067
avr 1912.6
(3) 		1727.3
(2.1) 		1011.4
(-1.2) 		1117.2
(-0.7) 		631.8
(-3) 		1073.4
(-0.9) 		1281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 704
1 2 3 4 range
A 879.7
(3)
P 		175.3
(-3)
P 		184.9
(-2.9)
P 		190.3
(-2.9)
P 		704
B 746
(3)
P 		248.4
(-2.7)
P 		219.3
(-3)
P 		329.8
(-1.7)
P 		527
C 860.4
(3)
P 		260.9
(-2.5)
P 		334.9
(-1.8)
P 		200.9
(-3)
P 		660
avr 828.7
(3) 		228.2
(-3) 		246.4
(-2.8) 		240.3
(-2.9) 		601

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 603
1 2 3 4 5 6 range
A 369.3
(-1.1)
P 		778.5
(3)
P 		184.2
(-3)
P 		302.3
(-1.8)
P 		206.4
(-2.8)
P 		283.6
(-2)
P 		594
B 677.3
(3)
P 		485
(0.6)
P 		210.5
(-2.9)
P 		341.2
(-1.2)
P 		199.3
(-3)
P 		410.9
(-0.3)
P 		478
C 662.6
(3)
P 		468.7
(0.6)
P 		336.3
(-1)
P 		175.2
(-3)
P 		233.3
(-2.3)
P 		319.2
(-1.2)
P 		487
avr 569.7
(2.9) 		577.4
(3) 		243.7
(-2.5) 		272.9
(-2) 		213
(-3) 		337.9
(-0.9) 		364
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178479_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3219
Sequence Type Exemplar sequence
Representative Public ID K08F8.6 NCBI
Target Description K08F8.6 /REP_DB=WormBase Gene ID /WP=CE11940 /TR=Q93442 /GB=CAA92667.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063465 NCBI Caenorhabditis elegans LEThal family member (let-19) (let-19) mRNA, complete cds. 11/11 None
SNAP00000026202 ENSEMBL cdna:SNAP chromosome:CEL140:II:8778828:8781351:1 11/11 None
GENEFINDER00000026215 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8778828:8781351:1 11/11 None
K08F8.6 ENSEMBL cdna:known chromosome:CEL140:II:8770995:8781939:1 gene:K08F8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8770991-8781348(+) 98.82 100.0
Public Domain and Genome References
Gene Title
Gene Symbol let-19
Ensembl K08F8.6
Entrez Gene 174402 Entrez gene
SwissProt Q93442 EMBL-EBI
WormBase CE37536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92667 Hypothetical protein K08F8.6 [Caenorhabditis elegans] emb|CAA91289.2| Hypothetical protein K08F8.6 [Caenorhabditis elegans] ref|NP_495866.2| LEThal family member (let-19) [Caenorhabditis elegans] dbj|BAE16563.1| Mediator complex subunit Med13 [Caenorhabditis elegans] 0.0
blast CAE59732 Hypothetical protein CBG03168 [Caenorhabditis briggsae] 0.0
blast CAF99193 unnamed protein product [Tetraodon nigroviridis] 6.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR009401 EMBL-EBI TRAP240 9.6E-12
Pfam IPR009401 EMBL-EBI TRAP240 9.6E-12
Sequence
Target Sequence 
>C. ELEGANS:178479_S_AT
aattcgacagactggcggaccttcaatgtttttcagcgaagattcgtcttccattgaaat
tcaaaatcaacctcttgcatctggatactacatctccacagcaccggctcccgaacttcc
agcatggttctgggcaacatgtccatctgcaaaacgtcattctcctgttcatctgaaatc
ctcgttacatattcatatcagtgaagtaaagaacgacgatattgcaatggaatctacaaa
agaaaaagaaaaggacaaggaaaaagatgaaaaagatgctcatccattggaatctcgaca
aactgaggaagtgcttcgacatgtactcgagtcgtataatgctctctcgtggctcaatct
caatcgacaaactggtgaccgttacagttgtctgccaattcacattcaacatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGACAGACTGGCGGACCTTCA 278 173 8295 Antisense
GCGGACCTTCAATGTTTTTCAGCGA 166 293 8309 Antisense
AATCAACCTCTTGCATCTGGATACT 629 171 8359 Antisense
TCTGGATACTACATCTCCACAGCAC 596 607 8374 Antisense
TTCTGGGCAACATGTCCATCTGCAA 12 695 8422 Antisense
TGCAAAACGTCATTCTCCTGTTCAT 272 577 8442 Antisense
GATGCTCATCCATTGGAATCTCGAC 44 415 8569 Antisense
GAGTCGTATAATGCTCTCTCGTGGC 503 399 8623 Antisense
CTCTCGTGGCTCAATCTCAATCGAC 488 231 8638 Antisense
GGTGACCGTTACAGTTGTCTGCCAA 365 501 8668 Antisense
GTCTGCCAATTCACATTCAACATCT 510 471 8684 Antisense
Sequence Source Affymetrix Proprietary Database