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[178478_at]

Description F47G4.6 /REP_DB=WormBase Gene ID /WP=CE18704 /TR=Q9XTS5 /GB=CAB16309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.1
(-2.9)
A 		3.8
(-3)
A 		3.8
(-3)
A 		17.8
(3)
A 		14
B 4.1
(3)
A 		3.3
(-1.8)
A 		3.2
(-2.4)
A 		3.1
(-3)
A 		1
C 12.3
(-2.1)
A 		5.4
(-2.8)
A 		2.9
(-3)
A 		65
(3)
A 		62
avr 6.8
(-2.2) 		4.2
(-2.8) 		3.3
(-3) 		28.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 10.5
(3)
A 		2.8
(-3)
A 		3.8
(-2.2)
A 		3.7
(-2.3)
A 		3.8
(-2.2)
A 		3.4
(-2.5)
A 		8
B 3.9
(0.7)
A 		2.5
(-2)
A 		4.9
(2.6)
A 		2.7
(-1.6)
A 		2
(-3)
A 		5.1
(3)
A 		3
C 1.8
(-3)
A 		2.9
(-2.1)
A 		9.3
(3)
A 		3
(-2)
A 		1.8
(-3)
A 		2.9
(-2.1)
A 		8
avr 5.4
(2) 		2.7
(-2.7) 		6
(3) 		3.1
(-2) 		2.5
(-3) 		3.8
(-0.8) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-0.7)
A 		0.8
(-3)
A 		1
(-2.3)
A 		2.6
(3)
A 		2
B 1.3
(3)
A 		0.8
(-2)
A 		0.8
(-2)
A 		0.7
(-3)
A 		1
C 4.1
(-1.1)
A 		1.5
(-2.7)
A 		1
(-3)
A 		11
(3)
A 		10
avr 2.3
(-0.8) 		1
(-2.8) 		0.9
(-3) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.9
(3)
A 		1
(-1.9)
A 		0.8
(-3)
A 		0.9
(-2.5)
A 		1.2
(-0.8)
A 		0.8
(-3)
A 		1
B 1.4
(0.5)
A 		0.8
(-2.5)
A 		1.2
(-0.5)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		1.9
(3)
A 		1
C 0.7
(-2.7)
A 		0.9
(-2)
A 		2.4
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
(-1.7)
A 		2
avr 1.3
(1.5) 		0.9
(-1.5) 		1.5
(3) 		0.7
(-3) 		0.9
(-1.5) 		1.2
(0.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2096
Sequence Type Exemplar sequence
Representative Public ID F47G4.6 NCBI
Target Description F47G4.6 /REP_DB=WormBase Gene ID /WP=CE18704 /TR=Q9XTS5 /GB=CAB16309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061050
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012301 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14067538:14068935:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061050 8/11 Cross Hyb Matching Probes None
SNAP00000012292 8/11 Cross Hyb Matching Probes None
F47G4.6 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14067468-14068866(+) 70.03 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16309 Hypothetical protein F47G4.6 [Caenorhabditis elegans] ref|NP_493451.2| F47G4.6 [Caenorhabditis elegans] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:178478_AT
gtcgatgaattccaatgctaccgtattccaaacgtctacgtccaatggtacgatctggag
ccaacaattcattggttgaccggtggaaattcaaattcgcggcaaattcaggagatggac
cagaagaagaaaaagatacgcaccctgagctacagtaaccttagctccgatttccagctc
aacatccgcctacgcgctattcttccgggaacggcagtcgctggagaaacgggccgcgcc
atacgccacctttggtcagatctcacagaaaatcgcccggcaatgggactcgctgaccga
ggaggagaagaaggtaagtaccagggaaaccagatgagtgttaagaattcagtagttttg
gtgctccaaaaaacatcaaaaaaatatcaaatttttccgagtttgttaagcacggcaaat
ttgccgaattcgctgtgctcggcaaatattgaaaaaagagatttgccgaatttgccgagc
tcggcagattttgagatttgccgcacacccctggcctacaaacagcgatgcgagaaaaat
cggaagacaagcatcgccaacgccgtcgaggagaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATGAATTCCAATGCTACCGTA 167 473 25 Antisense
ACGTCTACGTCCAATGGTACGATCT 382 93 56 Antisense
GATACGCACCCTGAGCTACAGTAAC 240 423 159 Antisense
CTACAGTAACCTTAGCTCCGATTTC 630 223 174 Antisense
TCTTCCGGGAACGGCAGTCGCTGGA 662 615 225 Antisense
CAGTCGCTGGAGAAACGGGCCGCGC 374 207 239 Antisense
CCACCTTTGGTCAGATCTCACAGAA 108 275 270 Antisense
GAAAATCGCCCGGCAATGGGACTCG 652 351 292 Antisense
CCCTGGCCTACAAACAGCGATGCGA 10 261 533 Antisense
ATCGGAAGACAAGCATCGCCAACGC 640 33 563 Antisense
TCGCCAACGCCGTCGAGGAGAAGGC 671 597 578 Antisense
Sequence Source Affymetrix Proprietary Database