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[178476_at]

Description ZC434.3 /REP_DB=WormBase Gene ID /WP=CE06578 /TR=Q23313 /GB=CAB00059.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 2.5
(-3)
A 		329
(3)
P 		240.3
(1.4)
P 		6.8
(-2.9)
A 		327
B 2.6
(-3)
A 		226.5
(1.7)
P 		288.3
(3)
P 		2.7
(-3)
A 		286
C 2.8
(-3)
A 		232.7
(2.1)
P 		271
(3)
P 		38.8
(-2.2)
A 		268
avr 2.6
(-3) 		262.7
(2.9) 		266.5
(3) 		16.1
(-2.7) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 67
(-2.5)
A 		338.7
(2.9)
P 		342.9
(3)
P 		308
(2.3)
P 		102.7
(-1.8)
P 		41.5
(-3)
A 		301
B 39.3
(-3)
A 		297.6
(2.4)
P 		235.1
(1.1)
P 		327.7
(3)
P 		160.8
(-0.5)
P 		57.4
(-2.6)
A 		288
C 28.2
(-3)
A 		345.5
(3)
P 		238.8
(1)
P 		307.1
(2.3)
P 		166.3
(-0.4)
P 		74.6
(-2.1)
M 		317
avr 44.8
(-3) 		327.3
(3) 		272.3
(1.8) 		314.3
(2.7) 		143.3
(-0.9) 		57.8
(-2.7) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 0.9
(-3)
A 		71.4
(3)
P 		62.8
(2.3)
P 		1
(-3)
A 		71
B 0.8
(-3)
A 		55.9
(2)
P 		66.8
(3)
P 		0.6
(-3)
A 		66
C 0.9
(-3)
A 		66.9
(1.2)
P 		94.5
(3)
P 		6.6
(-2.6)
A 		94
avr 0.9
(-3) 		64.7
(2.2) 		74.7
(3) 		2.7
(-2.9) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 12.4
(-2.9)
A 		120.5
(3)
P 		74.7
(0.5)
P 		78.1
(0.7)
P 		31
(-1.9)
P 		10.1
(-3)
A 		110
B 13.7
(-3)
A 		99.1
(3)
P 		57.1
(0)
P 		86.8
(2.1)
P 		65.3
(0.6)
P 		21.4
(-2.5)
A 		85
C 10.4
(-3)
A 		105.4
(3)
P 		60.8
(0.2)
P 		61.8
(0.2)
P 		53.8
(-0.3)
P 		25
(-2.1)
M 		95
avr 12.2
(-3) 		108.3
(3) 		64.2
(0.2) 		75.6
(1) 		50
(-0.6) 		18.8
(-2.6) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2435
Sequence Type Exemplar sequence
Representative Public ID ZC434.3 NCBI
Target Description ZC434.3 /REP_DB=WormBase Gene ID /WP=CE06578 /TR=Q23313 /GB=CAB00059.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060309 NCBI Caenorhabditis elegans ZC434.3 (ZC434.3) mRNA, complete cds. 11/11 None
SNAP00000018735 ENSEMBL cdna:SNAP chromosome:CEL140:I:10341672:10342382:-1 11/11 None
GENEFINDER00000018746 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10341672:10342527:-1 11/11 None
ZC434.3 ENSEMBL cdna:known chromosome:CEL140:I:10341672:10343828:-1 gene:ZC434.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10341602-10343759(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC434.3
Entrez Gene 172903 Entrez gene
SwissProt Q23313 EMBL-EBI
WormBase CE06578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00059 Hypothetical protein ZC434.3 [Caenorhabditis elegans] ref|NP_492710.1| ZC434.3 [Caenorhabditis elegans] 0.0
blast CAE73795 Hypothetical protein CBG21345 [Caenorhabditis briggsae] 0.0
blast CAB00059 Hypothetical protein ZC434.3 [Caenorhabditis elegans] ref|NP_492710.1| ZC434.3 [Caenorhabditis elegans] 1.0E-139
blast CAE73795 Hypothetical protein CBG21345 [Caenorhabditis briggsae] 1.0E-136
blast CAB00059 Hypothetical protein ZC434.3 [Caenorhabditis elegans] ref|NP_492710.1| ZC434.3 [Caenorhabditis elegans] 1.0E-120
blast CAE73795 Hypothetical protein CBG21345 [Caenorhabditis briggsae] 1.0E-116
blast AAA68326 Hypothetical protein F35D2.2 [Caenorhabditis elegans] ref|NP_495589.2| F35D2.2 [Caenorhabditis elegans] 7.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492710.1 1 7-26
ZC434.3 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:178476_AT
gagatttgattgttccagttcctggttggggtaacttcgatgtagacggaaatgtttact
atggacatattaatgtcgatactaaagtaggatatcaaattcgaccaacgaatcatctca
atattaaacccgaaacattggctcttttaggacagaatccagcattccgagaagcaagaa
aaaaggcaaaggaagttattgtgggaagaattccttatggttatgaaccaatcaagtgta
aaccaccatattgcaatccattcgttcatcatgctggagttgctgttgaagttgagcaag
gagatgactccttcttcattggtggaattgattttccacttccgatcggcgagaatggag
caggagtcagattcccattatcgggagctgtcgaacagggaacttcgccatacgcatacg
ctcatggaaacgcattcaatcctgtgtctccatttgattttcgaaaaattgatagcgacg
acgtgaaaccagattggccttatgcgccgggatctcgaagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTGATTGTTCCAGTTCCTGG 81 397 833 Antisense
GTTCCTGGTTGGGGTAACTTCGATG 299 437 850 Antisense
AACCACCATATTGCAATCCATTCGT 640 147 1073 Antisense
CATTCGTTCATCATGCTGGAGTTGC 338 217 1091 Antisense
ATGACTCCTTCTTCATTGGTGGAAT 543 45 1136 Antisense
GCAGGAGTCAGATTCCCATTATCGG 326 311 1192 Antisense
TTCGCCATACGCATACGCTCATGGA 66 697 1236 Antisense
GGAAACGCATTCAATCCTGTGTCTC 674 527 1258 Antisense
TCCTGTGTCTCCATTTGATTTTCGA 128 595 1272 Antisense
GAAACCAGATTGGCCTTATGCGCCG 442 359 1317 Antisense
TTATGCGCCGGGATCTCGAAGAAGA 6 681 1332 Antisense
Sequence Source Affymetrix Proprietary Database