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[178474_at]

Description C15A7.3 /REP_DB=WormBase Gene ID /WP=CE03023 /TR=Q18001 /GB=CAA91532.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 45      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 48.6
(3)
A 		42
(1.9)
A 		14.8
(-2.6)
A 		12.1
(-3)
A 		37
B 51
(3)
A 		24.3
(-0.9)
A 		24.2
(-0.9)
A 		9.7
(-3)
A 		41
C 46.5
(3)
A 		40.7
(-3)
A 		41.8
(-1.9)
A 		45.4
(1.9)
A 		6
avr 48.7
(3) 		35.7
(0) 		26.9
(-2) 		22.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 65.6
(2.7)
A 		26.6
(-0.8)
A 		52.9
(1.6)
A 		2.8
(-3)
A 		45.6
(0.9)
A 		68.7
(3)
M 		66
B 73.6
(3)
A 		49.5
(-0.1)
A 		26.5
(-3)
A 		37.2
(-1.6)
A 		60.1
(1.3)
A 		34.8
(-1.9)
A 		47
C 52.4
(0.7)
P 		75
(3)
A 		68.7
(2.4)
A 		55
(0.9)
A 		16.8
(-3)
A 		19.6
(-2.7)
A 		58
avr 63.9
(3) 		50.4
(0.5) 		49.4
(0.3) 		31.7
(-3) 		40.8
(-1.3) 		41
(-1.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.7
(3)
A 		9.1
(-0.2)
A 		3.9
(-2.2)
A 		1.8
(-3)
A 		16
B 16.3
(3)
A 		6
(-1.4)
A 		5.6
(-1.5)
A 		2.1
(-3)
A 		14
C 15.4
(3)
A 		11.7
(0.1)
A 		14.6
(2.4)
A 		7.7
(-3)
A 		8
avr 16.5
(3) 		8.9
(-0.6) 		8
(-1) 		3.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.1
(1.3)
A 		9.5
(0.3)
A 		11.5
(1.1)
A 		0.7
(-3)
A 		13.7
(1.9)
A 		16.7
(3)
M 		16
B 25.6
(3)
A 		16.5
(0.2)
A 		6.4
(-3)
A 		9.9
(-1.9)
A 		24.4
(2.6)
A 		13
(-0.9)
A 		19
C 19.4
(1.8)
P 		22.9
(3)
A 		17.5
(1.1)
A 		11.1
(-1)
A 		5.4
(-3)
A 		6.5
(-2.6)
A 		18
avr 19
(3) 		16.3
(1.6) 		11.8
(-0.7) 		7.2
(-3) 		14.5
(0.7) 		12.1
(-0.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16820
Sequence Type Exemplar sequence
Representative Public ID C15A7.3 NCBI
Target Description C15A7.3 /REP_DB=WormBase Gene ID /WP=CE03023 /TR=Q18001 /GB=CAA91532.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077617 NCBI Caenorhabditis elegans C15A7.3 (C15A7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000010464 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12070798:12073760:-1 11/11 None
C15A7.3 ENSEMBL cdna:known chromosome:CEL140:X:12073193:12073760:-1 gene:C15A7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010460 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12073192-12073760(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15A7.3
Entrez Gene 182624 Entrez gene
SwissProt Q18001 EMBL-EBI
WormBase CE03023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE69870 Hypothetical protein CBG16204 [Caenorhabditis briggsae] 1.0E-154
blast CAA91531 Hypothetical protein C15A7.2 [Caenorhabditis elegans] ref|NP_510017.2| C15A7.2 [Caenorhabditis elegans] 1.0E-141
blast AAH86291 LOC495696 protein [Xenopus laevis] 6.0E-56
blast CAA91532 Hypothetical protein C15A7.3 [Caenorhabditis elegans] ref|NP_510018.1| C15A7.3 [Caenorhabditis elegans] 1.0E-47
blast CAE69870 Hypothetical protein CBG16204 [Caenorhabditis briggsae] 1.0E-13
blast BAC11522.1 unnamed protein product [Homo sapiens] ref|NP_775904.1| hypothetical protein LOC284339 [Homo sapiens] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010464 6 207-229,250-272,277-299,311-330,345-367,379-401
Sequence
Target Sequence 
>C. ELEGANS:178474_AT
tattaaccacattctgctaccacatttatattgctcagggaaagcgtgctcaagggattc
ttagctccaaaagggattttgtgtatcttgataggttttgctttcaatcagacactggag
ctttagaatacacatttcgatatcccatgttctacccaactcaaatgctccttctatatt
ttgacaccgaagatcaatggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTAACCACATTCTGCTACCACAT 633 663 50 Antisense
GCTACCACATTTATATTGCTCAGGG 523 303 65 Antisense
ATTGCTCAGGGAAAGCGTGCTCAAG 516 5 79 Antisense
GAAAGCGTGCTCAAGGGATTCTTAG 464 359 89 Antisense
GGGATTCTTAGCTCCAAAAGGGATT 16 495 103 Antisense
GTGTATCTTGATAGGTTTTGCTTTC 367 485 130 Antisense
GACACTGGAGCTTTAGAATACACAT 543 367 160 Antisense
ACATTTCGATATCCCATGTTCTACC 534 105 181 Antisense
CCCAACTCAAATGCTCCTTCTATAT 577 257 204 Antisense
CAAATGCTCCTTCTATATTTTGACA 181 193 211 Antisense
TTTTGACACCGAAGATCAATGGCCA 418 675 228 Antisense
Sequence Source Affymetrix Proprietary Database