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[178471_at] 7TM chemoreceptor, srw family

Description ZK262.7 /REP_DB=WormBase Gene ID /WP=CE19325 /TR=Q9XTR5 /GB=CAB16549.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 02      6grp_cgc > 37      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 2.9
(-3)
A 		4.8
(-2.6)
A 		3.5
(-2.9)
A 		35.3
(3)
A 		32
B 3.7
(-3)
A 		9.3
(-2.6)
A 		6.3
(-2.8)
A 		83.2
(3)
A 		80
C 6.8
(-2.9)
A 		9.3
(-2.7)
A 		4.5
(-3)
A 		103.3
(3)
A 		99
avr 4.5
(-3) 		7.8
(-2.7) 		4.8
(-3) 		73.9
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.9
(0.9)
A 		9.3
(3)
A 		2.6
(-3)
A 		4.6
(-1.2)
A 		3.7
(-2)
A 		6.9
(0.9)
A 		7
B 1.5
(-3)
A 		7.2
(3)
A 		3.7
(-0.7)
A 		1.5
(-3)
A 		2.5
(-1.9)
A 		3.6
(-0.8)
A 		6
C 4.7
(-1.8)
A 		1.5
(-3)
A 		7.4
(-0.8)
A 		2.6
(-2.6)
A 		2.7
(-2.5)
A 		17.4
(3)
A 		16
avr 4.4
(-1.6) 		6
(-0.1) 		4.6
(-1.4) 		2.9
(-3) 		3
(-2.9) 		9.3
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.1
(-2.7)
A 		1
(-2.9)
A 		0.9
(-3)
A 		5.2
(3)
A 		4
B 1.2
(-3)
A 		2.3
(-2.6)
A 		1.5
(-2.9)
A 		17.7
(3)
A 		17
C 2.3
(-2.7)
A 		2.7
(-2.6)
A 		1.6
(-3)
A 		17.4
(3)
A 		16
avr 1.5
(-2.9) 		2
(-2.7) 		1.3
(-3) 		13.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.3
(-1.4)
A 		3.3
(3)
A 		0.6
(-3)
A 		1.2
(-1.7)
A 		1.1
(-1.9)
A 		1.7
(-0.6)
A 		3
B 0.5
(-2.7)
A 		2.4
(3)
A 		0.9
(-1.5)
A 		0.4
(-3)
A 		1
(-1.2)
A 		1.4
(-0)
A 		2
C 1.7
(-1.6)
A 		0.4
(-3)
A 		1.9
(-1.3)
A 		0.5
(-2.9)
A 		0.9
(-2.4)
A 		5.8
(3)
A 		5
avr 1.2
(-1.7) 		2
(0.4) 		1.1
(-2) 		0.7
(-3) 		1
(-2.2) 		3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14686
Sequence Type Exemplar sequence
Representative Public ID ZK262.7 NCBI
Target Description ZK262.7 /REP_DB=WormBase Gene ID /WP=CE19325 /TR=Q9XTR5 /GB=CAB16549.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075207
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000013664 ENSEMBL cdna:SNAP chromosome:CEL140:V:18434324:18436746:1 None
NM_075207 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-82) (srw-82) mRNA, complete cds. None
ZK262.7 ENSEMBL cdna:known chromosome:CEL140:V:18434324:18436199:1 gene:ZK262.7 None
GENEFINDER00000013671 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18435307:18436174:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18434323-18436746(+) 96.23 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-82
Ensembl ZK262.7
Entrez Gene 191269 Entrez gene
SwissProt Q9XTR5 EMBL-EBI
WormBase CE28863 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16549 Hypothetical protein ZK262.7 [Caenorhabditis elegans] ref|NP_507608.1| Serpentine Receptor, class W family member (srw-82) [Caenorhabditis elegans] 1.0E-164
blast CAB16548 Hypothetical protein ZK262.6 [Caenorhabditis elegans] ref|NP_507606.1| Serpentine Receptor, class W family member (srw-83) [Caenorhabditis elegans] 1.0E-90
blast CAB16549 Hypothetical protein ZK262.7 [Caenorhabditis elegans] ref|NP_507608.1| Serpentine Receptor, class W family member (srw-82) [Caenorhabditis elegans] 2.0E-61
blast CAB16548 Hypothetical protein ZK262.6 [Caenorhabditis elegans] ref|NP_507606.1| Serpentine Receptor, class W family member (srw-83) [Caenorhabditis elegans] 3.0E-49
blast CAB16549 Hypothetical protein ZK262.7 [Caenorhabditis elegans] ref|NP_507608.1| Serpentine Receptor, class W family member (srw-82) [Caenorhabditis elegans] 2.0E-48
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 4.0E-38
blast CAB05641 Hypothetical protein W06G6.6 [Caenorhabditis elegans] ref|NP_507209.1| Serpentine Receptor, class W family member (srw-76) [Caenorhabditis elegans] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507608.1 4 27-44,56-73,150-172,216-238
ZK262.7 4 27-44,56-73,150-172,216-238
SNAP00000013664 5 27-44,56-73,108-130,150-172,192-214
GENEFINDER00000013671 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:178471_AT
taaggagccctggactcctggagtaaactgcaccggatttccagcaaagtaccgtgaacc
ctatttttaccgcgcaccgaaaaaaaatcaactgttcaccagcgaaagatatgaaatttt
tacaggctgctctgatgtagatcctcattgcagcactttacccaattttcggtttactct
tgatgctcgaagtgttgaaatccgcgaaagtcgccgcgactatgctgagcaagaaagatg
cggtggaaagtactcctacagtaaccctacagtaacctacagtaccacaacagcaaaatt
tcccagatatcacacaagccgaatgatactcgtcatgacaatcttctacattttcgccag
ttttcccactggcgcctataaaattgtcaatttcttcttctacgagagctggaggaagga
cggttacttctatgtggtgtttacatacaccggcaaaatattcacatctctgttttgtgg
caatgcactgtcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGGAGCCCTGGACTCCTGGAGTA 170 637 543 Antisense
GTAAACTGCACCGGATTTCCAGCAA 356 461 565 Antisense
TGTAGATCCTCATTGCAGCACTTTA 394 559 678 Antisense
AATTTTCGGTTTACTCTTGATGCTC 558 175 706 Antisense
GAAATCCGCGAAAGTCGCCGCGACT 116 363 739 Antisense
ATTTCCCAGATATCACACAAGCCGA 374 17 840 Antisense
TGACAATCTTCTACATTTTCGCCAG 166 573 878 Antisense
TTTCCCACTGGCGCCTATAAAATTG 391 665 904 Antisense
AATTGTCAATTTCTTCTTCTACGAG 469 179 924 Antisense
GGACGGTTACTTCTATGTGGTGTTT 703 521 960 Antisense
GTTTTGTGGCAATGCACTGTCCCAT 604 447 1014 Antisense
Sequence Source Affymetrix Proprietary Database