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[178470_s_at]

Description T27E9.6 /REP_DB=WormBase Gene ID /WP=CE14273 /TR=O45863 /GB=CAB04872.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 12.3
(-3)
A 		29.8
(-0.2)
A 		50.1
(3)
A 		37
(0.9)
A 		38
B 43.5
(0.8)
A 		55.2
(2.8)
A 		21.8
(-3)
A 		56.1
(3)
A 		34
C 52.4
(1.4)
A 		65.7
(3)
A 		15.5
(-3)
A 		32.7
(-0.9)
A 		50
avr 36.1
(-1) 		50.2
(3) 		29.1
(-3) 		41.9
(0.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 60.1
(2.9)
A 		40
(-3)
A 		49.4
(-0.2)
A 		60.4
(3)
A 		53.7
(1)
A 		45.3
(-1.4)
A 		20
B 52
(0.8)
A 		49.6
(0.4)
A 		67.6
(3)
A 		46.5
(0)
A 		55.1
(1.2)
P 		25.4
(-3)
A 		42
C 30.9
(-3)
A 		38
(-1.1)
A 		37.3
(-1.3)
A 		49.5
(1.9)
A 		53.9
(3)
A 		44.3
(0.5)
A 		23
avr 47.7
(0.5) 		42.5
(-1.4) 		51.4
(1.9) 		52.1
(2.2) 		54.2
(3) 		38.3
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.5
(-3)
A 		6.5
(-1.6)
A 		13.1
(3)
A 		5.4
(-2.4)
A 		9
B 13.9
(3)
A 		13.6
(2.8)
A 		5
(-3)
A 		12
(1.7)
A 		9
C 17.3
(2.3)
A 		18.9
(3)
A 		5.4
(-3)
A 		5.5
(-3)
A 		14
avr 11.9
(1.8) 		13
(3) 		7.8
(-2.8) 		7.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.1
(-2.7)
A 		14.2
(0.8)
A 		10.8
(-3)
A 		15.3
(2)
A 		16.2
(3)
A 		11
(-2.8)
A 		5
B 18.1
(1)
A 		16.5
(0.3)
A 		16.4
(0.2)
A 		12.3
(-1.7)
A 		22.4
(3)
P 		9.5
(-3)
A 		13
C 11.4
(-1.6)
A 		11.6
(-1.4)
A 		9.5
(-3)
A 		10
(-2.6)
A 		17.4
(3)
A 		14.8
(1)
A 		8
avr 13.5
(-1.5) 		14.1
(-1) 		12.2
(-2.7) 		12.5
(-2.4) 		18.7
(3) 		11.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178470_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7164
Sequence Type Exemplar sequence
Representative Public ID T27E9.6 NCBI
Target Description T27E9.6 /REP_DB=WormBase Gene ID /WP=CE14273 /TR=O45863 /GB=CAB04872.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067386(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067386 NCBI Caenorhabditis elegans T27E9.6 (T27E9.6) mRNA, complete cds. 10/11 None
SNAP00000014269 ENSEMBL cdna:SNAP chromosome:CEL140:III:13474976:13475623:-1 11/11 None
GENEFINDER00000014273 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13474976:13475623:-1 11/11 None
T27E9.6 ENSEMBL cdna:known chromosome:CEL140:III:13474922:13475623:-1 gene:T27E9.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13474971-13475619(-) 96.14 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E9.6
Entrez Gene 176777 Entrez gene
SwissProt O45863 EMBL-EBI
WormBase CE34099 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04872 Hypothetical protein T27E9.6 [Caenorhabditis elegans] ref|NP_499787.2| T27E9.6 [Caenorhabditis elegans] 1.0E-97
blast CAB04872 Hypothetical protein T27E9.6 [Caenorhabditis elegans] ref|NP_499787.2| T27E9.6 [Caenorhabditis elegans] 1.0E-94
Sequence
Target Sequence 
>C. ELEGANS:178470_S_AT
gatcgcacccggtttttttcaagaggcatattgtcgggagtcgttggctgccaaggtgtt
acccggttgcaatgggaaagcctcgatgaggacgaggtcatgaaatggccattcacacaa
ggagacaccatgattgagcagctcattcaagcagatactcctgtatttgtgctgaaagag
agagtaggaagagaaactgacattcttcaagtgttctggatgcaagatagttcggttacc
aacgatgaagctcttgtagcaatcgatacgagcctgcgtagactggaaaatcctatggta
atgcctgcgaacgctctgaaatctctaaaaatttttcaggagaatgtcaacggggagatt
cgagaccccccagttgggccaccacctgcagaagttgtctaccgccctgttcccgcatcc
ttctggatcaatatagccgaacacgggaggcttgcggttcctgtgatgcctcgtgatgcc
ccacgtgatgccccacacgacgattccgacgacttgcaggcagaggatgaggatgaagat
ctgcgtcaaccgcgaagacgacgccactctccagatgataatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGCACCCGGTTTTTTTCAAGAG 669 413 46 Antisense
ATATTGTCGGGAGTCGTTGGCTGCC 66 19 73 Antisense
CTGCCAAGGTGTTACCCGGTTGCAA 326 235 93 Antisense
GGCCATTCACACAAGGAGACACCAT 33 545 152 Antisense
CTATGGTAATGCCTGCGAACGCTCT 386 223 338 Antisense
CACCACCTGCAGAAGTTGTCTACCG 308 201 425 Antisense
TTCCCGCATCCTTCTGGATCAATAT 163 699 455 Antisense
GCCGAACACGGGAGGCTTGCGGTTC 463 261 481 Antisense
CGATTCCGACGACTTGCAGGCAGAG 414 247 546 Antisense
GAAGATCTGCGTCAACCGCGAAGAC 151 339 580 Antisense
GACGCCACTCTCCAGATGATAATGA 152 381 605 Antisense
Sequence Source Affymetrix Proprietary Database