[Home] | [Total List]

[178469_at] 7TM receptor, sre family

Description F57G9.4 /REP_DB=WormBase Gene ID /WP=CE17920 /TR=O62269 /GB=CAB05752.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 67.3
(-0.9)
A 		65.4
(-1)
A 		21.4
(-3)
A 		154.5
(3)
M 		133
B 44.3
(-2.6)
A 		78.9
(3)
A 		41.9
(-3)
A 		57.9
(-0.4)
A 		37
C 46.9
(-2)
A 		131.3
(3)
A 		29.9
(-3)
A 		114.4
(2)
P 		101
avr 52.8
(-1.3) 		91.9
(1.7) 		31.1
(-3) 		108.9
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 18.9
(-1.7)
A 		6.3
(-3)
A 		29.7
(-0.7)
A 		62.2
(2.6)
A 		66.5
(3)
A 		20.2
(-1.6)
A 		60
B 68.6
(3)
A 		16
(-2.1)
A 		34
(-0.4)
A 		7.1
(-3)
A 		8.8
(-2.8)
A 		27.2
(-1)
A 		62
C 31.8
(-0.5)
A 		28.5
(-0.9)
A 		26.7
(-1.1)
A 		63.4
(3)
A 		9.1
(-3)
A 		23.3
(-1.4)
A 		54
avr 39.8
(2) 		16.9
(-3) 		30.1
(-0.1) 		44.2
(3) 		28.1
(-0.5) 		23.6
(-1.5) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 24.5
(3)
A 		14.2
(-0.3)
A 		5.6
(-3)
A 		22.6
(2.4)
M 		19
B 14.1
(-0.3)
A 		19.5
(3)
A 		9.7
(-3)
A 		12.3
(-1.4)
A 		10
C 15.5
(-1.9)
A 		37.7
(3)
A 		10.4
(-3)
A 		19.3
(-1)
P 		27
avr 18
(0.7) 		23.8
(3) 		8.6
(-3) 		18.1
(0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.5
(-2.6)
A 		2.2
(-3)
A 		6.5
(-1.6)
A 		15.8
(1.6)
A 		20.1
(3)
A 		4.9
(-2.1)
A 		18
B 23.9
(3)
A 		5.3
(-2.1)
A 		8.3
(-1.3)
A 		1.9
(-3)
A 		3.6
(-2.5)
A 		10.2
(-0.7)
A 		22
C 11.8
(2.4)
A 		8.7
(0.5)
A 		6.8
(-0.7)
A 		12.8
(3)
A 		3
(-3)
A 		7.8
(-0.1)
A 		10
avr 13.1
(3) 		5.4
(-3) 		7.2
(-1.6) 		10.2
(0.7) 		8.9
(-0.3) 		7.6
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178469_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3547
Sequence Type Exemplar sequence
Representative Public ID F57G9.4 NCBI
Target Description F57G9.4 /REP_DB=WormBase Gene ID /WP=CE17920 /TR=O62269 /GB=CAB05752.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064230 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-29) (sre-29) mRNA, complete cds. 11/11 None
F57G9.4 ENSEMBL cdna:known chromosome:CEL140:II:12399302:12401794:-1 gene:F57G9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038201 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12399298-12401791(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-29
Ensembl F57G9.4
Entrez Gene 186477 Entrez gene
SwissProt O62269 EMBL-EBI
WormBase CE17920 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 0.0
blast CAB03481 Hypothetical protein W05H5.6 [Caenorhabditis elegans] ref|NP_496649.2| Serpentine Receptor, class E (epsilon) family member (sre-33) [Caenorhabditis elegans] sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 (Protein sre-33) 1.0E-113
blast CAB03483 Hypothetical protein W05H5.7 [Caenorhabditis elegans] emb|CAB02950.2| Hypothetical protein W05H5.7 [Caenorhabditis elegans] ref|NP_496650.2| Serpentine Receptor, class E (epsilon) family member (sre-32) [Caenorhabditis elegans] sp|P90837|SRE32_CAEEL Serpentine receptor class epsilon-32 (Protein sre-32) 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496631.1 7 26-48,60-82,126-148,161-183,188-210,251-270,285-302
F57G9.4 7 26-48,60-82,126-148,161-183,188-210,251-270,285-302
Sequence
Target Sequence 
>C. ELEGANS:178469_AT
aacactcaactttttattcctctatttctaacagttatctctcaatttttatcaatatcc
acatctcttgccctactctttcaaaaagttgggccatttctagcccagcttccttggatt
atttgttgcccattttctgcaatggcatatttctttgtgaaaaagtgcaatgaatctttt
gaacgagagattagaaatccaaggagacgcaggcatttttcggtttcccagcaatttcag
gtcaaggagaatttaagagcgttatatcttggaacccggcttgtctttgtcgttttatca
tgcattgctctatgtggaatcggaattactgcactattttatgacctaatccccccattt
tgctgtcattttgtggagaacttcctgtttttacatccatatctcagctgcctgactgca
attttcagcgttcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTCAACTTTTTATTCCTCTAT 194 135 484 Antisense
CTCTTGCCCTACTCTTTCAAAAAGT 406 229 548 Antisense
CTAGCCCAGCTTCCTTGGATTATTT 106 225 583 Antisense
GGATTATTTGTTGCCCATTTTCTGC 146 509 599 Antisense
GAGACGCAGGCATTTTTCGGTTTCC 644 393 687 Antisense
TATATCTTGGAACCCGGCTTGTCTT 543 659 746 Antisense
GGCTTGTCTTTGTCGTTTTATCATG 457 537 761 Antisense
GCACTATTTTATGACCTAATCCCCC 170 307 814 Antisense
GAGAACTTCCTGTTTTTACATCCAT 162 393 859 Antisense
CATATCTCAGCTGCCTGACTGCAAT 76 215 881 Antisense
TGACTGCAATTTTCAGCGTTCCCCA 628 569 896 Antisense
Sequence Source Affymetrix Proprietary Database