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[178468_at]

Description F48F5.4 /REP_DB=WormBase Gene ID /WP=CE18710 /TR=Q9XV08 /GB=CAB04413.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 13      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 95
(-0.1)
P 		64.1
(-3)
A 		71.1
(-2.3)
A 		128.2
(3)
A 		64
B 70.3
(-0)
A 		70.9
(0)
A 		37.6
(-3)
A 		103.8
(3)
A 		66
C 89.6
(3)
P 		46.5
(-3)
A 		49.3
(-2.6)
A 		89.4
(3)
A 		43
avr 85
(0.6) 		60.5
(-2.1) 		52.7
(-3) 		107.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 20.8
(-1.8)
A 		71.6
(3)
A 		38.2
(-0.1)
A 		23.7
(-1.5)
A 		7.6
(-3)
A 		38.3
(-0.1)
A 		64
B 66.9
(3)
A 		44.1
(-0.8)
A 		33.1
(-2.7)
A 		34.1
(-2.5)
A 		41.4
(-1.3)
A 		31.3
(-3)
A 		36
C 89.6
(3)
A 		52.7
(-0.2)
A 		21.4
(-3)
A 		22.4
(-2.9)
A 		52.1
(-0.3)
A 		39
(-1.5)
A 		68
avr 59.1
(3) 		56.1
(2.4) 		30.9
(-2.2) 		26.7
(-3) 		33.7
(-1.7) 		36.2
(-1.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 34.6
(3)
P 		13.9
(-3)
A 		18.6
(-1.6)
A 		18.8
(-1.6)
A 		21
B 22.4
(3)
A 		17.5
(0.9)
A 		8.7
(-3)
A 		22.1
(2.9)
A 		14
C 29.7
(3)
P 		13.4
(-3)
A 		17.2
(-1.6)
A 		15.1
(-2.4)
A 		16
avr 28.9
(3) 		14.9
(-3) 		14.8
(-3) 		18.7
(-1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.8
(-2.6)
A 		25.4
(3)
A 		8.3
(-1.4)
A 		6
(-2)
A 		2.3
(-3)
A 		9.3
(-1.2)
A 		23
B 23.3
(3)
A 		14.7
(-0.4)
A 		8
(-3)
A 		9
(-2.6)
A 		16.8
(0.5)
A 		11.7
(-1.5)
A 		15
C 33.2
(3)
A 		16.1
(-0.6)
A 		5.4
(-2.8)
A 		4.5
(-3)
A 		16.9
(-0.4)
A 		13
(-1.2)
A 		29
avr 20.1
(3) 		18.7
(2.4) 		7.2
(-2.7) 		6.5
(-3) 		12
(-0.6) 		11.3
(-0.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13205
Sequence Type Exemplar sequence
Representative Public ID F48F5.4 NCBI
Target Description F48F5.4 /REP_DB=WormBase Gene ID /WP=CE18710 /TR=Q9XV08 /GB=CAB04413.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075534 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-70) (srd-70) mRNA, complete cds. 11/11 None
GENEFINDER00000024997 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20452137:20454448:1 11/11 None
F48F5.4 ENSEMBL cdna:known chromosome:CEL140:V:20452162:20454484:1 gene:F48F5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024991 7/11 Cross Hyb Matching Probes None
SNAP00000024992 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20452136-20454484(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-70
Ensembl F48F5.4
Entrez Gene 185988 Entrez gene
SwissProt Q9XV08 EMBL-EBI
WormBase CE34563 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04413 Hypothetical protein F48F5.4 [Caenorhabditis elegans] ref|NP_507935.2| Serpentine Receptor, class D (delta) family member (srd-70) [Caenorhabditis elegans] 0.0
blast CAB04413 Hypothetical protein F48F5.4 [Caenorhabditis elegans] ref|NP_507935.2| Serpentine Receptor, class D (delta) family member (srd-70) [Caenorhabditis elegans] 1.0E-177
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-145
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-144
blast AAF39774 Serpentine receptor, class d (delta) protein 67 [Caenorhabditis elegans] ref|NP_497521.1| Serpentine Receptor, class D (delta) family member (srd-67) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507935.2 7 10-31,43-62,95-112,133-150,191-208,229-251,271-293
F48F5.4 7 10-31,43-62,95-112,133-150,191-208,229-251,271-293
GENEFINDER00000024997 7 34-56,69-88,121-138,159-176,217-234,255-277,297-319
Sequence
Target Sequence 
>C. ELEGANS:178468_AT
tactcagtgcattacatattcccaatagcttatcaaattctaatgctcattccctcgtca
agcaacgcggaagtccacattgaaactcttcaacttcacccagaatacgactacacacca
tacttggactttggcggttacacttttgcacaaagaatctatgtagagaagacagcactg
ttcctgattgctgcaacattttactatccaatagttggaagttactggagataccaggcg
atgaaaatcttgaagacccactcatcatcgaatacgtcaaagggcacgcttgttttgtta
aggttcttgatcaagggactgaattttcaaattcttcttccaatgatcagctatatccca
actacttctatttatgtattcaacaaagttataggcgcgcaattctccttgtcccaatac
acagtcacatttctcggcaccattccgtgcgttctcgacccgtttgttcaaatctacttc
ataactccttaccgggaagcggttcggaaactattcaaccgcaagccacgcgtagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCAGTGCATTACATATTCCCAA 307 645 487 Antisense
CAAATTCTAATGCTCATTCCCTCGT 652 193 520 Antisense
AACTCTTCAACTTCACCCAGAATAC 163 141 570 Antisense
GAATACGACTACACACCATACTTGG 699 325 589 Antisense
GACTTTGGCGGTTACACTTTTGCAC 486 371 613 Antisense
GCACTGTTCCTGATTGCTGCAACAT 65 317 661 Antisense
AGACCCACTCATCATCGAATACGTC 448 71 740 Antisense
GATCAGCTATATCCCAACTACTTCT 461 421 831 Antisense
GTCCCAATACACAGTCACATTTCTC 492 475 897 Antisense
CAAATCTACTTCATAACTCCTTACC 456 189 955 Antisense
TATTCAACCGCAAGCCACGCGTAGT 133 663 998 Antisense
Sequence Source Affymetrix Proprietary Database