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[178467_at]

Description F36D1.8 /REP_DB=WormBase Gene ID /WP=CE18669 /TR=Q9XV37 /GB=CAB04310.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 42      4grp_total > 26      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 50.5
(-2.2)
A 		64.1
(-0.3)
P 		44.4
(-3)
P 		89
(3)
A 		45
B 74.6
(1.1)
P 		88.1
(3)
P 		84.7
(2.5)
P 		45.3
(-3)
A 		43
C 49
(-3)
P 		60.5
(-1.3)
P 		54.1
(-2.2)
P 		89.6
(3)
M 		41
avr 58
(-3) 		70.9
(1.7) 		61.1
(-1.9) 		74.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 79.8
(3)
A 		43
(-3)
A 		61.8
(0.1)
A 		72
(1.7)
P 		48.8
(-2.1)
P 		49.2
(-2)
P 		37
B 52.5
(0.5)
P 		44.5
(-3)
P 		58.2
(3)
P 		50.5
(-0.4)
P 		49.4
(-0.9)
P 		45.7
(-2.5)
P 		14
C 60.9
(-2.1)
P 		84.5
(1.6)
P 		93.5
(3)
A 		58.8
(-2.4)
M 		61.3
(-2)
A 		55
(-3)
P 		39
avr 64.4
(1.1) 		57.3
(-0.9) 		71.2
(3) 		60.4
(-0.1) 		53.2
(-2.1) 		50
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 18.4
(3)
A 		13.9
(-1)
P 		11.6
(-3)
P 		13
(-1.8)
A 		7
B 23.8
(3)
P 		21.8
(2.1)
P 		19.6
(1.2)
P 		9.7
(-3)
A 		14
C 16.2
(-1.2)
P 		17.4
(0.7)
P 		18.8
(3)
P 		15.1
(-3)
M 		4
avr 19.5
(3) 		17.7
(1.4) 		16.7
(0.6) 		12.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.7
(-0.4)
A 		15.3
(0.1)
A 		13.5
(-1.6)
A 		18.3
(3)
P 		14.7
(-0.4)
P 		12
(-3)
P 		6
B 18.3
(1.4)
P 		14.8
(-1.7)
P 		14.1
(-2.4)
P 		13.4
(-3)
P 		20.1
(3)
P 		17
(0.2)
P 		7
C 22.6
(1.6)
P 		25.8
(3)
P 		23.8
(2.1)
A 		11.8
(-3)
M 		19.8
(0.4)
A 		18.4
(-0.2)
P 		14
avr 18.5
(2.9) 		18.6
(3) 		17.1
(0.8) 		14.5
(-3) 		18.2
(2.4) 		15.8
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1327
Sequence Type Exemplar sequence
Representative Public ID F36D1.8 NCBI
Target Description F36D1.8 /REP_DB=WormBase Gene ID /WP=CE18669 /TR=Q9XV37 /GB=CAB04310.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060490 NCBI Caenorhabditis elegans F36D1.8 (F36D1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000013639 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11264674:11267346:-1 11/11 None
F36D1.8 ENSEMBL cdna:known chromosome:CEL140:I:11264674:11267349:-1 gene:F36D1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013616 4/11 Cross Hyb Matching Probes None
SNAP00000013617 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11264604-11267280(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D1.8
Entrez Gene 185350 Entrez gene
SwissProt Q9XV37 EMBL-EBI
WormBase CE18669 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04310 Hypothetical protein F36D1.8 [Caenorhabditis elegans] ref|NP_492891.1| F36D1.8 [Caenorhabditis elegans] 0.0
blast CAB04310 Hypothetical protein F36D1.8 [Caenorhabditis elegans] ref|NP_492891.1| F36D1.8 [Caenorhabditis elegans] 1.0E-180
blast CAE56341 Hypothetical protein CBG24013 [Caenorhabditis briggsae] 1.0E-117
blast CAE74298 Hypothetical protein CBG22000 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492891.1 1 21-40
F36D1.8 1 21-40
GENEFINDER00000013639 1 20-39
Sequence
Target Sequence 
>C. ELEGANS:178467_AT
gaggaccaattcctaaatcctacctttgaactgctaaatgatccagatttggtccgattc
gcttttattcgagatccaattcatcgattcatttctttatacctggataaatgtatttat
actaaatcttgctacaattgcggtacaaacatggcatgctttgttcagcggatatatgag
acattaaaccggataaaaagcaatcggaggagactacatgaagccagctcgattgagcag
catgttgctccgttgtcatggtactgtaactttaacgagaatatcaaaaagtattcccta
ctaatgatgggtgcggatcttgaagaaagaagatcctcgattctacatttggcaaatata
ctaaaacgacaaggattcagtgagaaaactgtggaaaagatacagaatgacgcgttgggc
ggagaaaccgcccattccacacacaagtcgtctcatcgacttgaagcagaacgccaagta
cgcgaagacccagtaattcgagatttactccacaaaatatatttctttgattatgtagtg
ttcccgttcaagagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGACCAATTCCTAAATCCTACCT 267 393 394 Antisense
AAATCCTACCTTTGAACTGCTAAAT 466 115 408 Antisense
TCCAGATTTGGTCCGATTCGCTTTT 626 589 435 Antisense
TTCATCGATTCATTTCTTTATACCT 465 687 473 Antisense
ATGGCATGCTTTGTTCAGCGGATAT 398 53 544 Antisense
GAGACTACATGAAGCCAGCTCGATT 304 393 603 Antisense
GTTGCTCCGTTGTCATGGTACTGTA 64 439 637 Antisense
GATCCTCGATTCTACATTTGGCAAA 76 417 725 Antisense
TCCACACACAAGTCGTCTCATCGAC 568 587 829 Antisense
GAACGCCAAGTACGCGAAGACCCAG 277 347 862 Antisense
TTATGTAGTGTTCCCGTTCAAGAGG 332 681 924 Antisense
Sequence Source Affymetrix Proprietary Database