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[178465_at]

Description C08B6.2 /REP_DB=WormBase Gene ID /WP=CE05239 /TR=Q17814 /GB=CAA96585.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 127.7
(-3)
A 		201.4
(3)
A 		174.1
(0.8)
A 		173.7
(0.7)
P 		74
B 149.2
(-3)
P 		188.3
(1)
A 		182.3
(0.4)
P 		207.5
(3)
P 		58
C 156.4
(-1.4)
P 		217.5
(3)
A 		213.1
(2.7)
P 		133.7
(-3)
P 		84
avr 144.4
(-3) 		202.4
(3) 		189.8
(1.7) 		171.6
(-0.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 160.4
(-1.8)
P 		239.7
(0.4)
P 		292.3
(1.8)
P 		232.3
(0.2)
P 		335.7
(3)
P 		115.9
(-3)
A 		220
B 207.4
(-1.9)
P 		367.6
(3)
P 		244.5
(-0.8)
P 		330.9
(1.9)
P 		307.1
(1.1)
P 		172.7
(-3)
A 		195
C 175.4
(-2.8)
P 		375
(3)
P 		202.7
(-2)
P 		280.5
(0.3)
P 		168
(-3)
A 		185
(-2.5)
M 		207
avr 181.1
(-2.2) 		327.4
(3) 		246.5
(0.1) 		281.2
(1.4) 		270.3
(1) 		157.9
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 46.5
(3)
A 		43.7
(2.2)
A 		45.5
(2.7)
A 		25.4
(-3)
P 		21
B 47.6
(3)
P 		46.5
(1.8)
A 		42.2
(-3)
P 		44.2
(-0.8)
P 		5
C 51.8
(0.4)
P 		62.5
(1.6)
A 		74.3
(3)
P 		22.5
(-3)
P 		52
avr 48.6
(1.6) 		50.9
(2.2) 		54
(3) 		30.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 29.6
(-2.9)
P 		85.2
(1.7)
P 		63.7
(-0.1)
P 		58.9
(-0.5)
P 		101.3
(3)
P 		28.2
(-3)
A 		73
B 72.2
(-1.8)
P 		122.4
(2.8)
P 		59.4
(-3)
P 		87.6
(-0.4)
P 		124.8
(3)
P 		64.4
(-2.5)
A 		65
C 65
(-1.7)
P 		114.4
(3)
P 		51.6
(-3)
P 		56.4
(-2.5)
P 		54.3
(-2.7)
A 		61.9
(-2)
M 		63
avr 55.6
(-2.6) 		107.3
(3) 		58.2
(-2.3) 		67.6
(-1.3) 		93.5
(1.5) 		51.5
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12137
Sequence Type Exemplar sequence
Representative Public ID C08B6.2 NCBI
Target Description C08B6.2 /REP_DB=WormBase Gene ID /WP=CE05239 /TR=Q17814 /GB=CAA96585.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171526 NCBI Caenorhabditis elegans C08B6.11 (C08B6.11) mRNA, complete cds. 11/11 None
GENEFINDER00000004967 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10108648:10112361:1 9/11 None
C08B6.11 ENSEMBL cdna:known chromosome:CEL140:V:10110513:10112479:1 gene:C08B6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10108292-10112479(+) 98.3 100.0
Public Domain and Genome References
Gene Title
Ensembl C08B6.11
Entrez Gene 182388 Entrez gene
SwissProt Q8MQE5 EMBL-EBI
WormBase CE31297 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 0.0
blast CAA96585 Hypothetical protein C08B6.2 [Caenorhabditis elegans] ref|NP_505598.2| C08B6.2 [Caenorhabditis elegans] 1.0E-155
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 1.0E-154
blast CAA99784 Hypothetical protein C44H9.6 [Caenorhabditis elegans] ref|NP_506214.1| C44H9.6 [Caenorhabditis elegans] 5.0E-47
blast CAA99784 Hypothetical protein C44H9.6 [Caenorhabditis elegans] ref|NP_506214.1| C44H9.6 [Caenorhabditis elegans] 2.0E-36
blast CAA96585 Hypothetical protein C08B6.2 [Caenorhabditis elegans] ref|NP_505598.2| C08B6.2 [Caenorhabditis elegans] 2.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741612.1 2 200-219,341-363
C08B6.11 2 200-219,341-363
GENEFINDER00000004967 1 639-658
Sequence
Target Sequence 
>C. ELEGANS:178465_AT
agtaacaacgtggcaccggagtgcatcgaaattcatataccttctaataatttcctatta
ccttttctgttattatgtggattcgctattcttggatatatttgttgctgctcaaatcgg
atctggagattactgatcaaactatgtgtttgtttggctgaattgtttgattcaatgaaa
gtaagaattgacaagaagagcgaggaagttcgaataatatccattcataataatattgaa
gaaaatccggtagaaatagaattacttcccgagcacaacaataattacaacggagaacct
gaaaacaacagttcgaatacaaataatgaagttaatgagctgttagaggttgttcgtgat
gaaatgaagcctaaattacggtcaagtttcataagaatgatcaagtcattctggaaaatg
aatttttctttgttgcgccttctattttactttgccattaaatctcgatggtcaattgta
tttcttatatttttcattgctttcccattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTAACAACGTGGCACCGGAGTGCA 491 47 2077 Antisense
GCACCGGAGTGCATCGAAATTCATA 336 315 2089 Antisense
TTCCTATTACCTTTTCTGTTATTAT 675 699 2128 Antisense
ATTATGTGGATTCGCTATTCTTGGA 42 13 2148 Antisense
ATTCTTGGATATATTTGTTGCTGCT 620 11 2164 Antisense
TGTTGCTGCTCAAATCGGATCTGGA 472 563 2179 Antisense
ACTATGTGTTTGTTTGGCTGAATTG 207 101 2217 Antisense
TAGAATTACTTCCCGAGCACAACAA 434 651 2333 Antisense
GAGCTGTTAGAGGTTGTTCGTGATG 390 387 2413 Antisense
TGCGCCTTCTATTTTACTTTGCCAT 238 585 2510 Antisense
ATATTTTTCATTGCTTTCCCATTAA 580 19 2563 Antisense
Sequence Source Affymetrix Proprietary Database