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[178464_at]

Description R193.2 /REP_DB=WormBase Gene ID /WP=CE23929 /TR=Q9N5F6 /GB=AAF39956.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 52      6grp_total > 07      4grp_total > 59      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 857
1 2 3 4 range
A 663.9
(1.3)
P 		874.8
(3)
P 		682.4
(1.4)
P 		145.9
(-3)
A 		729
B 618.8
(1.3)
P 		856.2
(3)
P 		819.9
(2.7)
P 		17.7
(-3)
A 		839
C 680.9
(1.7)
P 		752.2
(2.2)
P 		854.3
(3)
P 		83.5
(-3)
P 		771
avr 654.5
(1.6) 		827.7
(3) 		785.5
(2.7) 		82.4
(-3) 		745

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 363.7
(3)
P 		262.3
(0.8)
P 		137.6
(-1.8)
P 		149
(-1.6)
P 		143
(-1.7)
P 		83.4
(-3)
P 		280
B 474.3
(3)
P 		169.9
(-1.3)
P 		144
(-1.7)
P 		121.9
(-2)
P 		96.4
(-2.4)
P 		52.6
(-3)
A 		422
C 456
(3)
P 		206
(-0.8)
P 		205.8
(-0.8)
P 		135.3
(-1.9)
P 		120.3
(-2.1)
P 		64.6
(-3)
P 		391
avr 431.3
(3) 		212.7
(-0.6) 		162.5
(-1.4) 		135.4
(-1.9) 		119.9
(-2.1) 		66.9
(-3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 241.7
(3)
P 		189.9
(1.6)
P 		178.4
(1.3)
P 		21.4
(-3)
A 		220
B 197.3
(2.6)
P 		211.5
(3)
P 		190
(2.4)
P 		3.8
(-3)
A 		208
C 225.4
(1.5)
P 		216.3
(1.3)
P 		297.8
(3)
P 		14.1
(-3)
P 		284
avr 221.5
(3) 		205.9
(2.5) 		222.1
(3) 		13.1
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 67.1
(0.8)
P 		93.3
(3)
P 		30
(-2.2)
P 		37.8
(-1.6)
P 		43.2
(-1.1)
P 		20.3
(-3)
P 		73
B 165
(3)
P 		56.5
(-1.5)
P 		35
(-2.4)
P 		32.3
(-2.5)
P 		39.2
(-2.2)
P 		19.6
(-3)
A 		145
C 169
(3)
P 		62.8
(-1.3)
P 		52.4
(-1.7)
P 		27.2
(-2.8)
P 		38.9
(-2.3)
P 		21.6
(-3)
P 		147
avr 133.7
(3) 		70.9
(-0.3) 		39.1
(-2) 		32.4
(-2.4) 		40.4
(-1.9) 		20.5
(-3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18072
Sequence Type Exemplar sequence
Representative Public ID R193.2 NCBI
Target Description R193.2 /REP_DB=WormBase Gene ID /WP=CE23929 /TR=Q9N5F6 /GB=AAF39956.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075817(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075817 NCBI Caenorhabditis elegans R193.2 (R193.2) mRNA, complete cds. 10/11 None
GENEFINDER00000008773 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1133691:1149641:-1 10/11 None
SNAP00000008764 ENSEMBL cdna:SNAP chromosome:CEL140:X:1141350:1148474:-1 9/11 None
R193.2 ENSEMBL cdna:known chromosome:CEL140:X:1133673:1147964:-1 gene:R193.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1141187-1147964(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R193.2
Entrez Gene 182256 Entrez gene
SwissProt Q9N5F6 EMBL-EBI
WormBase CE37140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39956 Hypothetical protein R193.2 [Caenorhabditis elegans] ref|NP_508218.2| R193.2 [Caenorhabditis elegans] 0.0
blast CAE60518 Hypothetical protein CBG04137 [Caenorhabditis briggsae] 0.0
blast T31064 hypothetical protein C05D9.8 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.1E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.0E-16
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 5.3E-22
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.1E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.0E-16
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 5.3E-22
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.1E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.0E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008773 2 20-42,55-77
SNAP00000008764 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:178464_AT
ctatctctgttctcaagatcccatcagaattatagggatgttgcaagtgttcttgctaat
gttcgacagaatgtctatgaaaatacaacttctggctacagagcacttaatgagaacttc
ctcgtgctcttcacgcttggatcgtcatcttcctctgtatcccaggagctgtcgaacctc
caacgcaagggtattcgcacaatttccattggcctctcttcaaatatgactccctcggct
ctatcttcatttgctcagaatgcattcatggtatccgattggaactcttccttcactgga
atcgacacaaattacaacttggctgatagaatctatcaaatgacaactaaaaagcgtaca
ccatctacgtcgaatttcttcggaaatttgatttatgttgttgaccaatccggaaatagt
tatgcggatcatagcaatattgtacaatttgtgtcagactccgtgactccattccttgtg
ggaaatattaaaactcaaatcagtattgtgccattctctgacaatgtcattgctccattg
caactctcttcatcacagctggtaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATCTCTGTTCTCAAGATCCCATC 523 223 3463 Antisense
TTAATGAGAACTTCCTCGTGCTCTT 167 685 3569 Antisense
CTGTATCCCAGGAGCTGTCGAACCT 25 239 3617 Antisense
GAACCTCCAACGCAAGGGTATTCGC 543 143 3636 Antisense
TATTCGCACAATTTCCATTGGCCTC 288 665 3654 Antisense
TGGCCTCTCTTCAAATATGACTCCC 192 545 3672 Antisense
GAACTCTTCCTTCACTGGAATCGAC 671 349 3744 Antisense
ACACCATCTACGTCGAATTTCTTCG 412 109 3820 Antisense
ATTTGTGTCAGACTCCGTGACTCCA 696 17 3909 Antisense
TGTCATTGCTCCATTGCAACTCTCT 388 559 3987 Antisense
ACTCTCTTCATCACAGCTGGTAGGT 398 99 4005 Antisense
Sequence Source Affymetrix Proprietary Database