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[178463_at]

Description ZK337.4 /REP_DB=WormBase Gene ID /WP=CE16721 /TR=O46017 /GB=CAB05009.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 09      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(-3)
A 		1.5
(-2.7)
A 		1.9
(-1.7)
A 		3.7
(3)
A 		2
B 0.7
(-3)
A 		3.2
(-1.8)
A 		1.9
(-2.4)
A 		12.7
(3)
A 		12
C 1.7
(-2.7)
A 		1.4
(-3)
A 		3.3
(-1.2)
A 		7.9
(3)
A 		7
avr 1.3
(-3) 		2
(-2.4) 		2.4
(-2) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.4
(-1.5)
A 		2.2
(-2.7)
A 		1.5
(-3)
A 		10.7
(0.6)
A 		16.9
(3)
A 		4.9
(-1.7)
A 		15
B 1.6
(-2.1)
A 		2.8
(-0.9)
A 		4.8
(1.2)
A 		6.6
(3)
A 		0.7
(-3)
A 		1.8
(-1.9)
A 		6
C 1.6
(-2.7)
A 		1.8
(-2.7)
A 		1
(-2.9)
A 		17.3
(2.7)
A 		0.8
(-3)
A 		18.2
(3)
A 		17
avr 2.9
(-2.6) 		2.3
(-3) 		2.4
(-2.9) 		11.5
(3) 		6.1
(-0.5) 		8.3
(0.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.5
(3)
A 		0.3
(-3)
A 		0.5
(3)
A 		0.5
(3)
A 		0
B 0.2
(-3)
A 		0.8
(-1.6)
A 		0.5
(-2.3)
A 		2.7
(3)
A 		3
C 0.6
(-1.7)
A 		0.4
(-3)
A 		1.1
(1.7)
A 		1.3
(3)
A 		1
avr 0.4
(-3) 		0.5
(-2.5) 		0.7
(-1.4) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-2.1)
A 		0.8
(-2.4)
A 		0.3
(-3)
A 		2.7
(0)
A 		5.1
(3)
A 		1.2
(-1.9)
A 		5
B 0.6
(-1.7)
A 		0.9
(-0.4)
A 		1.2
(0.9)
A 		1.7
(3)
A 		0.3
(-3)
A 		0.7
(-1.3)
A 		1
C 0.6
(-2.7)
A 		0.6
(-2.7)
A 		0.3
(-3)
A 		3.5
(0.3)
A 		0.3
(-3)
A 		6.1
(3)
A 		6
avr 0.7
(-2.7) 		0.8
(-2.4) 		0.6
(-3) 		2.6
(2.7) 		1.9
(0.7) 		2.7
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1116
Sequence Type Exemplar sequence
Representative Public ID ZK337.4 NCBI
Target Description ZK337.4 /REP_DB=WormBase Gene ID /WP=CE16721 /TR=O46017 /GB=CAB05009.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061211 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-4) (tag-4) mRNA, complete cds. 11/11 None
SNAP00000024737 ENSEMBL cdna:SNAP chromosome:CEL140:I:14992613:14993157:1 10/11 None
ZK337.4 ENSEMBL cdna:known chromosome:CEL140:I:14992613:14993218:1 gene:ZK337.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024763 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14992543-14993149(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-4
Ensembl ZK337.4
Entrez Gene 191284 Entrez gene
SwissProt O46017 EMBL-EBI
WormBase CE16721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05009 Hypothetical protein ZK337.4 [Caenorhabditis elegans] ref|NP_493612.1| Temporarily Assigned Gene name family member (tag-4) [Caenorhabditis elegans] 3.0E-89
blast CAB05009 Hypothetical protein ZK337.4 [Caenorhabditis elegans] ref|NP_493612.1| Temporarily Assigned Gene name family member (tag-4) [Caenorhabditis elegans] 1.0E-65
Sequence
Target Sequence 
>C. ELEGANS:178463_AT
gtacttgaactttcagcgagcctcaccttttcaacaactgtgtggcaaaaatgaaagtta
tgattttctggaaattcccgagggaacgtttgatgaaattgcaatgtccgaagatgatca
aatggaagttgcggcgtttgactcgatgtttccaaagcaatattttgatgatcttctgga
tgatgatatgggctatgaagaacctgaaaatgaagcaaacgttagagaaaatggtggaga
aaccgaaaatgttgagaaaaaattggaggaaaacaaagataatgagggagcagcggaaga
acaaaacgatcagcaaaaaaaagaagtcaataataataaccatagccaagaggttgtggt
ggaattttggcaaaccccaaagctgattttatttcaaaatgcaagaaatatgaatgatgt
tgtgtgggttttaagacctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGAACTTTCAGCGAGCCTCA 153 461 15 Antisense
AGCCTCACCTTTTCAACAACTGTGT 267 83 33 Antisense
TTCCCGAGGGAACGTTTGATGAAAT 623 693 89 Antisense
GAAATTGCAATGTCCGAAGATGATC 23 365 109 Antisense
TGGAAGTTGCGGCGTTTGACTCGAT 121 547 137 Antisense
GACTCGATGTTTCCAAAGCAATATT 166 373 154 Antisense
GATGATATGGGCTATGAAGAACCTG 15 411 196 Antisense
GCAGCGGAAGAACAAAACGATCAGC 315 313 304 Antisense
TGTGGTGGAATTTTGGCAAACCCCA 53 555 369 Antisense
GGCAAACCCCAAAGCTGATTTTATT 88 535 383 Antisense
TGTTGTGTGGGTTTTAAGACCTCGA 77 561 432 Antisense
Sequence Source Affymetrix Proprietary Database