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[178460_at]

Description F59A1.7 /REP_DB=WormBase Gene ID /WP=CE18791 /TR=Q9XUW2 /GB=CAB04531.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 06      6grp_total > 98      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 94.2
(-2.8)
P 		88.3
(-3)
A 		95.1
(-2.8)
P 		310.8
(3)
P 		223
B 116.9
(-2.4)
P 		80
(-3)
A 		80.3
(-3)
M 		463.4
(3)
P 		383
C 79.7
(-2.8)
P 		72.2
(-3)
P 		95.6
(-2.3)
P 		281.8
(3)
P 		210
avr 96.9
(-2.6) 		80.2
(-3) 		90.3
(-2.8) 		352
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 97.7
(-2.2)
P 		61.2
(-3)
P 		105
(-2)
P 		153
(-0.9)
P 		299.9
(2.6)
P 		319.1
(3)
P 		258
B 43.3
(-3)
P 		82.9
(-2.4)
P 		68.6
(-2.6)
P 		141.3
(-1.5)
P 		356.5
(1.8)
P 		438.7
(3)
P 		395
C 59.5
(-3)
A 		59.7
(-3)
P 		110.4
(-2)
P 		134.2
(-1.6)
P 		311
(1.9)
P 		370.5
(3)
P 		311
avr 66.8
(-3) 		67.9
(-3) 		94.7
(-2.5) 		142.8
(-1.5) 		322.5
(2) 		376.1
(3) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 34.3
(0.4)
P 		19.2
(-3)
A 		24.9
(-1.7)
P 		45.5
(3)
P 		26
B 37.3
(-1.6)
P 		19.8
(-2.9)
A 		18.6
(-3)
M 		98.8
(3)
P 		80
C 26.4
(-1.7)
P 		20.7
(-3)
P 		33.3
(-0.2)
P 		47.5
(3)
P 		27
avr 32.7
(-1.3) 		19.9
(-3) 		25.6
(-2.2) 		63.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 18
(-3)
P 		21.8
(-2.7)
P 		22.9
(-2.6)
P 		38.8
(-1.3)
P 		90.5
(3)
P 		77.7
(1.9)
P 		73
B 15.1
(-3)
P 		27.6
(-2.5)
P 		16.7
(-2.9)
P 		37.4
(-2.1)
P 		144.9
(2.2)
P 		163.6
(3)
P 		149
C 22
(-2.8)
A 		18.2
(-3)
P 		28.1
(-2.4)
P 		27
(-2.5)
P 		100.6
(1.7)
P 		124
(3)
P 		106
avr 18.4
(-3) 		22.5
(-2.8) 		22.6
(-2.8) 		34.4
(-2.1) 		112
(2.4) 		121.8
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14245
Sequence Type Exemplar sequence
Representative Public ID F59A1.7 NCBI
Target Description F59A1.7 /REP_DB=WormBase Gene ID /WP=CE18791 /TR=Q9XUW2 /GB=CAB04531.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075067 NCBI Caenorhabditis elegans F59A1.7 (F59A1.7) mRNA, complete cds. 11/11 None
SNAP00000002316 ENSEMBL cdna:SNAP chromosome:CEL140:V:17659527:17661828:-1 10/11 None
GENEFINDER00000002333 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17659527:17660739:-1 10/11 None
F59A1.7 ENSEMBL cdna:known chromosome:CEL140:V:17658901:17660919:-1 gene:F59A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17658900-17660919(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.7
Entrez Gene 186560 Entrez gene
SwissProt Q9XUW2 EMBL-EBI
WormBase CE18791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04531 Hypothetical protein F59A1.7 [Caenorhabditis elegans] ref|NP_507468.1| F59A1.7 [Caenorhabditis elegans] 0.0
blast CAB04531 Hypothetical protein F59A1.7 [Caenorhabditis elegans] ref|NP_507468.1| F59A1.7 [Caenorhabditis elegans] 1.0E-158
blast CAB04531 Hypothetical protein F59A1.7 [Caenorhabditis elegans] ref|NP_507468.1| F59A1.7 [Caenorhabditis elegans] 1.0E-148
blast CAB60569 Hypothetical protein Y37H2A.4 [Caenorhabditis elegans] ref|NP_507536.1| Y37H2A.4 [Caenorhabditis elegans] 1.0E-115
blast CAB60569 Hypothetical protein Y37H2A.4 [Caenorhabditis elegans] ref|NP_507536.1| Y37H2A.4 [Caenorhabditis elegans] 1.0E-113
blast CAB60569 Hypothetical protein Y37H2A.4 [Caenorhabditis elegans] ref|NP_507536.1| Y37H2A.4 [Caenorhabditis elegans] 1.0E-106
blast CAB60959 Hypothetical protein Y59A8B.11 [Caenorhabditis elegans] ref|NP_507530.1| Y59A8B.11 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.8E-12
Sequence
Target Sequence 
>C. ELEGANS:178460_AT
atattccgggaattctgtcaggttttcaaccaggaatcctcagaagtattaaaattctgc
accacctggatctgagcactttggaggaaatttttaggctggagcaatggaaaatggcaa
aatcagctgacattatatcaagtgaacattcaagttttcccatcgaaaatctcgttcatc
tttcaaatttctacttagaactggattatttcacggtcgcagatgctgttaaaatccgag
atattctcttaaaaaccgccaatttcaacagtggaactatcagtgtgctggatttttacg
atttcataatagatattctgcatgttttcgatccaaattataatttcgttgaagatgaag
ttttctataatgacggagaagtattatcactgaacaagcacattattgctcaatccgaaa
tgactaataaacttgaaaaactcgcggataagttggattcgatgaaaatctcaactccga
aaatcccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCCGGGAATTCTGTCAGGTTT 264 17 713 Antisense
CAGGTTTTCAACCAGGAATCCTCAG 46 209 731 Antisense
GTATTAAAATTCTGCACCACCTGGA 28 453 758 Antisense
ACCACCTGGATCTGAGCACTTTGGA 487 85 773 Antisense
GTGAACATTCAAGTTTTCCCATCGA 547 481 854 Antisense
CGTTCATCTTTCAAATTTCTACTTA 175 247 885 Antisense
GGATTATTTCACGGTCGCAGATGCT 645 509 915 Antisense
GAGATATTCTCTTAAAAACCGCCAA 546 395 950 Antisense
GTGTGCTGGATTTTTACGATTTCAT 674 487 995 Antisense
ATTCTGCATGTTTTCGATCCAAATT 604 9 1027 Antisense
AAATCTCAACTCCGAAAATCCCAAT 148 117 1178 Antisense
Sequence Source Affymetrix Proprietary Database