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[178459_s_at]

Description F57G4.6 /REP_DB=WormBase Gene ID /WP=CE18771 /TR=Q9XUX7 /GB=CAB04505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 75      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 68.7
(-1.7)
P 		68.4
(-1.7)
A 		33.2
(-3)
P 		200.6
(3)
P 		167
B 60.9
(-1.8)
P 		63.4
(-1.5)
P 		46.6
(-3)
M 		116
(3)
P 		69
C 121.8
(-0.2)
P 		54.5
(-2.4)
M 		36
(-3)
P 		218
(3)
P 		182
avr 83.8
(-1.1) 		62.1
(-2) 		38.6
(-3) 		178.2
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 75
(-3)
P 		105.7
(3)
P 		80.2
(-2)
P 		79.2
(-2.2)
P 		86.3
(-0.8)
P 		86.6
(-0.7)
P 		31
B 28.9
(-3)
P 		78.4
(1.1)
P 		63.7
(-0.1)
P 		73
(0.7)
P 		53.9
(-0.9)
P 		100.5
(3)
P 		72
C 56.3
(-3)
P 		79.4
(-0)
P 		94.4
(1.9)
P 		82.8
(0.4)
P 		56.8
(-2.9)
P 		102.9
(3)
P 		47
avr 53.4
(-3) 		87.8
(1.8) 		79.4
(0.6) 		78.3
(0.5) 		65.7
(-1.3) 		96.7
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 25
(1.7)
P 		14.8
(-1.2)
A 		8.7
(-3)
P 		29.4
(3)
P 		21
B 19.4
(0.7)
P 		15.7
(-0.9)
P 		10.8
(-3)
M 		24.7
(3)
P 		14
C 40.3
(3)
P 		15.7
(-2.3)
M 		12.6
(-3)
P 		36.8
(2.2)
P 		28
avr 28.2
(2.4) 		15.4
(-1.6) 		10.7
(-3) 		30.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.8
(-3)
P 		37.6
(3)
P 		17.5
(-2.1)
P 		20.1
(-1.4)
P 		26
(0.1)
P 		21.1
(-1.2)
P 		24
B 10.1
(-3)
P 		26.1
(0.5)
P 		15.5
(-1.8)
P 		19.3
(-1)
P 		21.9
(-0.4)
P 		37.5
(3)
P 		27
C 20.9
(-1.6)
P 		24.2
(-0.4)
P 		24
(-0.5)
P 		16.6
(-3)
P 		18.4
(-2.4)
P 		34.4
(3)
P 		18
avr 14.9
(-3) 		29.3
(2.4) 		19
(-1.5) 		18.7
(-1.6) 		22.1
(-0.3) 		31
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178459_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13372
Sequence Type Exemplar sequence
Representative Public ID F57G4.6 NCBI
Target Description F57G4.6 /REP_DB=WormBase Gene ID /WP=CE18771 /TR=Q9XUX7 /GB=CAB04505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075061 NCBI Caenorhabditis elegans F57G4.6 (F57G4.6) mRNA, complete cds. 11/11 None
SNAP00000009861 ENSEMBL cdna:SNAP chromosome:CEL140:V:17645582:17646485:1 11/11 None
SNAP00000009863 ENSEMBL cdna:SNAP chromosome:CEL140:V:17648072:17650026:-1 11/11 None
GENEFINDER00000009865 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17646595:17651290:-1 11/11 None
GENEFINDER00000009871 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17644513:17646555:1 11/11 None
F57G4.6 ENSEMBL cdna:known chromosome:CEL140:V:17645582:17646485:1 gene:F57G4.6 11/11 None
F57G4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17648072:17650742:-1 gene:F57G4.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F57G4.6
F57G4.7
Entrez Gene 186461 Entrez gene
SwissProt Q9XUX7 EMBL-EBI
WormBase CE18771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-146
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-143
blast CAB04511 Hypothetical protein F57G4.9 [Caenorhabditis elegans] ref|NP_507463.1| F57G4.9 [Caenorhabditis elegans] 1.0E-132
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 1.0E-126
blast T22867 hypothetical protein F57G4.7 - Caenorhabditis elegans 1.0E-117
blast T22867 hypothetical protein F57G4.7 - Caenorhabditis elegans 1.0E-115
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:178459_S_AT
tccatgtttgtacgatctcactgacaaacattataaggatcgagaaaagcacgatttttg
gatcaaaattgaaaaggatctaggatttttggcagaagatagaggatctaatgcaatcaa
aatttggaattcattaaaatcggaatatttgagagctcgcaaaaaaaagtgtcccagtgg
aagtggtctcgacgatatagagaacagcttcgatttctatcaggatatgagtttttttga
agcatctttatcaaaaagattctcaacaccgatttcttcgtcttcacttgatacaactac
acgtcttgcgaattacgaatcgaacaatgttctcactccaaaaagaaattataagaaagt
gaaggaagagtccacctatgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATGTTTGTACGATCTCACTGAC 409 591 153 Antisense
GTACGATCTCACTGACAAACATTAT 374 459 162 Antisense
AAGGATCTAGGATTTTTGGCAGAAG 278 161 226 Antisense
GAGCTCGCAAAAAAAAGTGTCCCAG 114 387 305 Antisense
GTGTCCCAGTGGAAGTGGTCTCGAC 412 487 321 Antisense
GAACAGCTTCGATTTCTATCAGGAT 390 351 354 Antisense
TCTTCGTCTTCACTTGATACAACTA 178 617 427 Antisense
GATACAACTACACGTCTTGCGAATT 333 423 442 Antisense
ACGTCTTGCGAATTACGAATCGAAC 319 95 453 Antisense
CGAACAATGTTCTCACTCCAAAAAG 260 251 473 Antisense
GTGAAGGAAGAGTCCACCTATGAAA 634 481 511 Antisense
Sequence Source Affymetrix Proprietary Database