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[178458_at]

Description C31C9.3 /REP_DB=WormBase Gene ID /WP=CE08498 /TR=O45285 /GB=CAB05695.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 40      4grp_total > 21      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 236.7
(1.5)
P 		175.4
(-0.6)
P 		108.7
(-3)
P 		278.3
(3)
P 		170
B 194.2
(1.2)
P 		125.9
(-1.8)
P 		98.4
(-3)
P 		233.8
(3)
P 		135
C 189.6
(1)
P 		139.2
(-3)
P 		178.3
(0.1)
P 		215.2
(3)
P 		76
avr 206.8
(1.1) 		146.8
(-2) 		128.5
(-3) 		242.4
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 144.4
(-1.6)
P 		257.7
(3)
P 		193.6
(0.4)
P 		222.1
(1.6)
P 		109.3
(-3)
P 		201.3
(0.7)
P 		148
B 179.4
(0.2)
P 		174
(-0.1)
P 		220.2
(3)
P 		168.8
(-0.5)
P 		131.6
(-3)
P 		172.5
(-0.2)
P 		89
C 142.2
(-3)
P 		181.2
(-0.6)
P 		211.5
(1.2)
P 		242.5
(3)
P 		141.7
(-3)
P 		182.4
(-0.6)
P 		101
avr 155.3
(-1) 		204.3
(2.5) 		208.4
(2.8) 		211.1
(3) 		127.5
(-3) 		185.4
(1.2) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 86.2
(3)
P 		38.1
(-2)
P 		28.4
(-3)
P 		40.7
(-1.7)
P 		58
B 61.9
(3)
P 		31.1
(-1.7)
P 		22.8
(-3)
P 		49.8
(1.1)
P 		39
C 62.8
(3)
P 		40
(-2.2)
P 		62.1
(2.8)
P 		36.3
(-3)
P 		27
avr 70.3
(3) 		36.4
(-3) 		37.8
(-2.8) 		42.3
(-2) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 26.6
(-3)
P 		91.7
(3)
P 		42.2
(-1.6)
P 		56.3
(-0.3)
P 		33
(-2.4)
P 		49
(-0.9)
P 		65
B 62.4
(2.4)
P 		57.9
(1)
P 		53.5
(-0.3)
P 		44.7
(-3)
P 		53.5
(-0.3)
P 		64.3
(3)
P 		20
C 52.7
(-0.3)
P 		55.3
(0.7)
P 		53.8
(0.1)
P 		48.8
(-1.9)
P 		45.9
(-3)
P 		61.1
(3)
P 		15
avr 47.2
(-2.2) 		68.3
(3) 		49.8
(-1.6) 		49.9
(-1.6) 		44.1
(-3) 		58.1
(0.5) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3403
Sequence Type Exemplar sequence
Representative Public ID C31C9.3 NCBI
Target Description C31C9.3 /REP_DB=WormBase Gene ID /WP=CE08498 /TR=O45285 /GB=CAB05695.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064468 NCBI Caenorhabditis elegans C31C9.3 (C31C9.3) mRNA, complete cds. 11/11 None
SNAP00000002044 ENSEMBL cdna:SNAP chromosome:CEL140:II:13641458:13643620:1 11/11 None
GENEFINDER00000002051 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13641458:13643620:1 11/11 None
C31C9.3 ENSEMBL cdna:known chromosome:CEL140:II:13641458:13643620:1 gene:C31C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13641454-13643617(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31C9.3
Entrez Gene 183082 Entrez gene
SwissProt O45285 EMBL-EBI
WormBase CE08498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05695 Hypothetical protein C31C9.3 [Caenorhabditis elegans] ref|NP_496869.1| C31C9.3 [Caenorhabditis elegans] 0.0
blast CAB05696 Hypothetical protein C31C9.4 [Caenorhabditis elegans] ref|NP_496870.2| C31C9.4 [Caenorhabditis elegans] 3.0E-44
blast CAB03799 Hypothetical protein B0391.5 [Caenorhabditis elegans] ref|NP_506881.1| B0391.5 [Caenorhabditis elegans] 4.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-46
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-10
Sequence
Target Sequence 
>C. ELEGANS:178458_AT
gttgcattgaactatctgtctagggtattgaagagcccgaagttgaagctggaaaagtta
agactggactttttggagcataataaagaggatacccagtgtatggaagaattattaact
gtgcttgaaaattccgaaccccatgttctgaacattgaattcgaaggactaaacttccac
gaaacatctagtgttctcaaaaacctgaaaaatgttgaagagatacaactatcaatgtac
agtatacaagagttgtctggaattgagaagctcgttgagctggagcaatggaagacagca
aagacacttgatatatcgagtcatgaagacattgagatggatattaaagatttgctgcac
tttcaatcaattgatgttcgtctgaaatcgttttcagttcaggatgcggttaaggttaag
gagaccctcgaactccgcacctctgacttcagatcaggaacgttcagagtccttaacaca
gatactcgaaaaatcggaaaagtattcaacccaaaatatacagacgctgctaacaacaca
ttcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCATTGAACTATCTGTCTAGGG 701 437 529 Antisense
AAGACTGGACTTTTTGGAGCATAAT 151 153 588 Antisense
CTGTGCTTGAAAATTCCGAACCCCA 449 203 647 Antisense
ATTCCGAACCCCATGTTCTGAACAT 415 7 659 Antisense
GATTTGCTGCACTTTCAATCAATTG 431 427 877 Antisense
TTGATGTTCGTCTGAAATCGTTTTC 330 705 899 Antisense
TCGTTTTCAGTTCAGGATGCGGTTA 4 605 916 Antisense
TCCGCACCTCTGACTTCAGATCAGG 79 597 962 Antisense
GGAACGTTCAGAGTCCTTAACACAG 16 529 985 Antisense
CAACCCAAAATATACAGACGCTGCT 189 185 1035 Antisense
GACGCTGCTAACAACACATTCAACT 511 379 1051 Antisense
Sequence Source Affymetrix Proprietary Database