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[178457_at]

Description F11C3.1 /REP_DB=WormBase Gene ID /WP=CE09347 /TR=O02243 /GB=CAB04087.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      6grp_total > 70      4grp_total > 36      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 39.9
(1.1)
A 		20.7
(-3)
A 		27.4
(-1.6)
A 		48.9
(3)
P 		28
B 61.3
(3)
A 		57.5
(2.2)
A 		44.7
(-0.5)
A 		33
(-3)
A 		28
C 31.1
(-2.4)
A 		52.9
(3)
A 		28.6
(-3)
A 		45
(1)
A 		24
avr 44.1
(3) 		43.7
(2.8) 		33.6
(-3) 		42.3
(2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 55
(-0.3)
P 		64.4
(0.8)
A 		53.1
(-0.6)
P 		74
(2)
P 		82.4
(3)
P 		33.3
(-3)
A 		49
B 24.6
(-3)
A 		54.6
(1.7)
P 		59.8
(2.5)
P 		62.8
(3)
P 		43
(-0.1)
P 		30.4
(-2.1)
M 		38
C 51.9
(-0.9)
A 		53
(-0.9)
A 		56.7
(-0.5)
P 		98.6
(3)
P 		27.6
(-3)
A 		65.3
(0.2)
P 		71
avr 43.8
(-2.9) 		57.3
(-0.6) 		56.5
(-0.7) 		78.5
(3) 		51
(-1.6) 		43
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.5
(3)
A 		4.5
(-3)
A 		7.2
(-1.4)
A 		7.2
(-1.4)
P 		10
B 19.5
(3)
A 		14.2
(0.5)
A 		10.4
(-1.4)
A 		7
(-3)
A 		13
C 10.3
(-0.9)
A 		15.2
(3)
A 		10
(-1.1)
A 		7.6
(-3)
A 		8
avr 14.8
(3) 		11.3
(0.2) 		9.2
(-1.5) 		7.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.1
(-2.3)
P 		22.9
(2.3)
A 		11.6
(-1.8)
P 		18.8
(0.8)
P 		24.9
(3)
P 		8.1
(-3)
A 		17
B 8.6
(-3)
A 		18.2
(3)
P 		14.5
(0.7)
P 		16.6
(2)
P 		17.5
(2.6)
P 		11.4
(-1.3)
M 		10
C 19.2
(1.8)
A 		16.2
(0.4)
A 		14.4
(-0.5)
P 		19.8
(2)
P 		8.9
(-3)
A 		21.9
(3)
P 		13
avr 12.6
(-3) 		19.1
(3) 		13.5
(-2.2) 		18.4
(2.4) 		17.1
(1.2) 		13.8
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1936
Sequence Type Exemplar sequence
Representative Public ID F11C3.1 NCBI
Target Description F11C3.1 /REP_DB=WormBase Gene ID /WP=CE09347 /TR=O02243 /GB=CAB04087.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061196 NCBI Caenorhabditis elegans F11C3.1 (F11C3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023711 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14877457:14879483:1 11/11 None
SNAP00000023704 ENSEMBL cdna:SNAP chromosome:CEL140:I:14877517:14879483:1 11/11 None
F11C3.1 ENSEMBL cdna:known chromosome:CEL140:I:14875955:14879483:1 gene:F11C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14875885-14879414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11C3.1
Entrez Gene 184343 Entrez gene
SwissProt O02243 EMBL-EBI
WormBase CE09347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04087 Hypothetical protein F11C3.1 [Caenorhabditis elegans] ref|NP_493597.1| F11C3.1 [Caenorhabditis elegans] 0.0
blast CAB04087 Hypothetical protein F11C3.1 [Caenorhabditis elegans] ref|NP_493597.1| F11C3.1 [Caenorhabditis elegans] 1.0E-173
blast CAB04087 Hypothetical protein F11C3.1 [Caenorhabditis elegans] ref|NP_493597.1| F11C3.1 [Caenorhabditis elegans] 1.0E-170
blast NP_921821 putative helicase [Oryza sativa (japonica cultivar-group)] gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultivar-group)] gb|AAK54302.1| putative helicase [Oryza sativa (japonica cultivar-group)] 2.0E-16
blast AAG51081 hypothetical protein [Arabidopsis thaliana] ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana] 3.0E-16
blast AAG52315 hypothetical protein, 5' partial; 93859-91015 [Arabidopsis thaliana] 9.0E-14
blast AAG51081 hypothetical protein [Arabidopsis thaliana] ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana] 9.0E-14
Sequence
Target Sequence 
>C. ELEGANS:178457_AT
gaatggcatcattttgactccaaaaaaagcagacgtagaatatatcaacttgaaaattat
ggatcaaattaaaggaaaggatttggtcttcgaagcaaagctcaacacaagaattataag
atctgacctaagtttgcattcaatgactctcagttttgagtttctctatgctaggctgtc
tttttcagtagattccaagcatgagaaaggttgtatcgttgctcttgacgaaccattcga
gggtctccaaaaaggaacacgtctactttttgaagatttgaatggaaatcatttatgttg
taaagtaatcgaaactggaaaagatgtcgatattagcagagtgaagagacttattggttc
cagtggaaaatcaaacaatactcagcaaagtgttcttcagttcccagtcagtttgaactt
cgcatccaccattcatggttctcaggggaagtcgttcgaaaaacttggattgtacaaact
gaatgaatgttttgagcacggaatgatctacacagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGCATCATTTTGACTCCAAAA 530 331 825 Antisense
TAAGATCTGACCTAAGTTTGCATTC 162 633 941 Antisense
TGAGTTTCTCTATGCTAGGCTGTCT 499 567 981 Antisense
AGGCTGTCTTTTTCAGTAGATTCCA 138 55 997 Antisense
GTTGTATCGTTGCTCTTGACGAACC 468 433 1034 Antisense
GACGAACCATTCGAGGGTCTCCAAA 213 379 1051 Antisense
CTCAGCAAAGTGTTCTTCAGTTCCC 704 227 1205 Antisense
CAGTCAGTTTGAACTTCGCATCCAC 533 207 1229 Antisense
TCGCATCCACCATTCATGGTTCTCA 707 599 1244 Antisense
ATGGTTCTCAGGGGAAGTCGTTCGA 32 49 1259 Antisense
GAGCACGGAATGATCTACACAGCAA 312 389 1318 Antisense
Sequence Source Affymetrix Proprietary Database