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[178456_at]

Description F57G4.8 /REP_DB=WormBase Gene ID /WP=CE18773 /TR=Q9XUX2 /GB=CAB04510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 35
(-1.2)
A 		32.7
(-1.5)
A 		21.8
(-3)
A 		65.8
(3)
A 		44
B 21.9
(-1.6)
A 		26.2
(-1.3)
A 		4.5
(-3)
A 		81.1
(3)
A 		77
C 50.9
(-0.5)
A 		35.4
(-3)
A 		37.2
(-2.7)
A 		72.9
(3)
A 		38
avr 35.9
(-1.3) 		31.4
(-1.8) 		21.2
(-3) 		73.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 15.2
(-2.6)
A 		10.9
(-3)
A 		30.1
(-1.1)
A 		44.9
(0.4)
A 		71.3
(3)
M 		51.9
(1.1)
A 		60
B 6.1
(-3)
A 		17.4
(-2.1)
A 		26.7
(-1.3)
A 		58.2
(1.3)
A 		79.6
(3)
P 		55.4
(1)
P 		74
C 15.4
(-3)
A 		16.8
(-2.9)
A 		52
(0.7)
A 		53.2
(0.8)
A 		55.7
(1)
A 		75.5
(3)
P 		60
avr 12.2
(-3) 		15
(-2.7) 		36.3
(-0.4) 		52.1
(1.2) 		68.9
(3) 		60.9
(2.2) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.8
(3)
A 		7.1
(-1.8)
A 		5.7
(-3)
A 		9.6
(0.3)
A 		7
B 7
(-0.8)
A 		6.5
(-1)
A 		1
(-3)
A 		17.3
(3)
A 		16
C 16.8
(3)
A 		10.2
(-3)
A 		13
(-0.5)
A 		12.3
(-1.1)
A 		7
avr 12.2
(2.2) 		7.9
(-1.8) 		6.6
(-3) 		13.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.8
(-3)
A 		3.9
(-2.6)
A 		6.6
(-1.8)
A 		11.4
(-0.2)
A 		21.5
(3)
M 		12.6
(0.1)
A 		19
B 2.1
(-3)
A 		5.8
(-2.3)
A 		6.5
(-2.1)
A 		15.4
(-0.4)
A 		32.3
(3)
P 		20.7
(0.7)
P 		30
C 5.7
(-2.8)
A 		5.1
(-3)
A 		13.2
(-0.6)
A 		10.7
(-1.3)
A 		18
(0.8)
A 		25.3
(3)
P 		20
avr 3.5
(-3) 		4.9
(-2.6) 		8.8
(-1.4) 		12.5
(-0.4) 		23.9
(3) 		19.5
(1.7) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13690
Sequence Type Exemplar sequence
Representative Public ID F57G4.8 NCBI
Target Description F57G4.8 /REP_DB=WormBase Gene ID /WP=CE18773 /TR=Q9XUX2 /GB=CAB04510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075064 NCBI Caenorhabditis elegans F57G4.8 (F57G4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000009869 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17651400:17653098:-1 9/11 None
F57G4.8 ENSEMBL cdna:known chromosome:CEL140:V:17651502:17653098:-1 gene:F57G4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009864 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17651501-17653098(-) 95.44 100.0
Public Domain and Genome References
Gene Title
Ensembl F57G4.8
Entrez Gene 186462 Entrez gene
SwissProt Q9XUX2 EMBL-EBI
WormBase CE18773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 0.0
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 1.0E-168
blast CAB60576 Hypothetical protein Y37H2A.7 [Caenorhabditis elegans] ref|NP_507539.1| Y37H2A.7 [Caenorhabditis elegans] 4.0E-81
blast CAB60576 Hypothetical protein Y37H2A.7 [Caenorhabditis elegans] ref|NP_507539.1| Y37H2A.7 [Caenorhabditis elegans] 5.0E-81
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 3.0E-74
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 4.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:178456_AT
gacgtcaaactcgaccgatatctggattacgaaaaaattgaaatcatggagaaattgctg
aaaaaagtgaaatacattaaagtgaaccagtttgttgtccgcgactgtgacacaattatt
cacgttcttccgtatttgagaccgggaacacttgaggagcttcattttgtaccggcttcc
tcgcacgtatcgtttgatcggattgtgaatacgttgcagttttgttgtgccaagaaattt
tttatggacgatgaaacttacaaattatcaaaatcgacggggattgacaactttttccat
ttgtctcacttcatcatttcggtgcaagagttcacaacgcgagacgcgatgaaaattaaa
aatgttcgttttaagcttttagttcaagctcgcgtcgcggctcgttttacactcaaaata
ataaaactgcgtggcgtgtactgcagaaaaccttatatttatggtgcctccatagtctgc
ggaaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCAAACTCGACCGATATCTGG 24 377 601 Antisense
GTTTGTTGTCCGCGACTGTGACACA 411 449 690 Antisense
GACACAATTATTCACGTTCTTCCGT 269 365 709 Antisense
GACCGGGAACACTTGAGGAGCTTCA 394 383 740 Antisense
AGGAGCTTCATTTTGTACCGGCTTC 431 55 755 Antisense
CTTCCTCGCACGTATCGTTTGATCG 577 219 776 Antisense
GACGGGGATTGACAACTTTTTCCAT 530 281 876 Antisense
GTCTCACTTCATCATTTCGGTGCAA 496 469 903 Antisense
GCAAGAGTTCACAACGCGAGACGCG 404 321 924 Antisense
AGCTTTTAGTTCAAGCTCGCGTCGC 316 79 974 Antisense
GTGCCTCCATAGTCTGCGGAAAACG 176 479 1064 Antisense
Sequence Source Affymetrix Proprietary Database