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[178455_s_at]

Description R119.5 /REP_DB=WormBase Gene ID /WP=CE18159 /TR=O61706 /GB=AAC16428.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_high_8_8 > 12      6grp_highest_nonorm > 80      6grp_total > 36      4grp_total > 12      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 236.6
(-0.9)
P 		241.7
(-0.6)
P 		194.1
(-3)
A 		314.5
(3)
P 		120
B 208.7
(-0.8)
P 		162.9
(-2.6)
P 		151.2
(-3)
P 		311.6
(3)
P 		160
C 193.9
(-1.6)
P 		190.6
(-3)
P 		192.7
(-2.1)
P 		204.4
(3)
P 		14
avr 213.1
(-0.9) 		198.4
(-1.8) 		179.3
(-3) 		276.8
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 224.2
(1.3)
P 		241.4
(3)
P 		180.1
(-3)
P 		194.9
(-1.6)
P 		207.5
(-0.3)
P 		197.4
(-1.3)
P 		61
B 165.5
(-0.2)
P 		215.4
(3)
P 		167.3
(-0.1)
P 		122.3
(-3)
P 		162.2
(-0.4)
P 		203.1
(2.2)
P 		93
C 204.6
(1.3)
P 		239.9
(3)
P 		154
(-1.2)
P 		179.5
(0.1)
P 		116.8
(-3)
P 		149.7
(-1.4)
P 		123
avr 198.1
(0.1) 		232.2
(3) 		167.1
(-2.6) 		165.6
(-2.7) 		162.2
(-3) 		183.4
(-1.2) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 86.1
(3)
P 		52.5
(-2)
P 		50.7
(-2.3)
A 		46
(-3)
P 		40
B 66.6
(3)
P 		40.2
(-2)
P 		35
(-3)
P 		66.4
(3)
P 		32
C 64.2
(2.4)
P 		54.8
(0.7)
P 		67.2
(3)
P 		34.5
(-3)
P 		33
avr 72.3
(3) 		49.2
(-2.9) 		51
(-2.5) 		49
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 41.3
(-2.7)
P 		85.9
(3)
P 		39.2
(-3)
P 		49.4
(-1.7)
P 		62.6
(0)
P 		48.1
(-1.9)
P 		47
B 57.6
(0.5)
P 		71.7
(2.4)
P 		40.6
(-1.9)
P 		32.4
(-3)
P 		65.9
(1.6)
P 		75.7
(3)
P 		43
C 75.8
(3)
P 		73.2
(2.6)
P 		39.2
(-2.5)
P 		36.1
(-3)
P 		37.8
(-2.7)
P 		50.1
(-0.9)
P 		40
avr 58.2
(0) 		76.9
(3) 		39.7
(-2.9) 		39.3
(-3) 		55.4
(-0.4) 		58
(-0) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178455_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2553
Sequence Type Exemplar sequence
Representative Public ID R119.5 NCBI
Target Description R119.5 /REP_DB=WormBase Gene ID /WP=CE18159 /TR=O61706 /GB=AAC16428.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026415 NCBI Caenorhabditis elegans R119.5 (R119.5) mRNA, complete cds. 11/11 None
SNAP00000007615 ENSEMBL cdna:SNAP chromosome:CEL140:I:383490:394414:-1 9/11 None
GENEFINDER00000007620 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:388798:394414:-1 11/11 None
R119.5 ENSEMBL cdna:known chromosome:CEL140:I:386243:394414:-1 gene:R119.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:388797-394414(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R119.5
Entrez Gene 171631 Entrez gene
SwissProt O61706 EMBL-EBI
WormBase CE18159 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604171_AT similar to Protein C20orf36 cfa
CANINE:1593411_AT similar to Protein C20orf36 cfa
CANINE_2:CFA.21242.1.S1_AT similar to Protein C20orf36 cfa
CANINE_2:CFA.5176.1.A1_AT similar to Protein C20orf36 cfa
CANINE_2:CFAAFFX.20518.1.S1_AT similar to Protein C20orf36 cfa
CHICKEN:GGA.12331.2.S1_A_AT similar to Protein C20orf36 gga
HG-U133_PLUS_2:237179_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U133B:237179_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HU35KSUBA:N79660_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HU35KSUBC:RC_AA424320_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
U133_X3P:HS.184628.2.A1_3P_A_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
U133_X3P:HS.131874.0.A1_3P_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U133A_2:212406_S_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U133_PLUS_2:212406_S_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U133A:212406_S_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U95AV2:32187_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U95C:64356_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
HG-U95D:90784_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 hs
MG-U74BV2:113595_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MG-U74BV2:106836_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MG-U74BV2:162763_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MOE430A:1427075_S_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MOUSE430A_2:1427075_S_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MOUSE430_2:1427075_S_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MOE430A:1427074_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MOUSE430A_2:1427074_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MOUSE430_2:1427074_AT protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 mm
MU19KSUBA:TC21001_AT RIKEN cDNA 5330414D10 gene (5330414D10Rik), mRNA mm
MU19KSUBC:TC38917_AT RIKEN cDNA 5330414D10 gene (5330414D10Rik), mRNA mm
RAE230A:1374454_AT Similar to RIKEN cDNA 5330414D10 (predicted) rn
RAT230_2:1374454_AT Similar to RIKEN cDNA 5330414D10 (predicted) rn
RAE230A:1375916_AT Similar to RIKEN cDNA 5330414D10 (predicted) rn
RAT230_2:1375916_AT Similar to RIKEN cDNA 5330414D10 (predicted) rn
RG-U34B:RC_AA955163_AT Similar to RIKEN cDNA 5330414D10 (predicted) rn
RG-U34A:RC_AI639155_AT Similar to RIKEN cDNA 5330414D10 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC16428 Hypothetical protein R119.5 [Caenorhabditis elegans] ref|NP_001021586.1| R119.5 [Caenorhabditis elegans] 0.0
blast CAE74387 Hypothetical protein CBG22118 [Caenorhabditis briggsae] 6.0E-40
blast CAE74387 Hypothetical protein CBG22118 [Caenorhabditis briggsae] 7.0E-40
blast AAH84479 Hypothetical protein LOC496500 [Xenopus tropicalis] ref|NP_001011087.1| hypothetical protein LOC496500 [Xenopus tropicalis] 7.0E-23
blast AAH84479 Hypothetical protein LOC496500 [Xenopus tropicalis] ref|NP_001011087.1| hypothetical protein LOC496500 [Xenopus tropicalis] 8.0E-23
Sequence
Target Sequence 
>C. ELEGANS:178455_S_AT
ttgtgtagactccgaaattttccatttttacttccgaaatgtagcaccagcatatgtgct
cgaatggacgattaatcatgatagaccccgccatcatcgcatactttcctcgatagctcg
accagaaactccaaatactccgagaatggagattgtaatgattccgaacatcaatgatcc
ttccaccaccggcctggttgaacgtcccaatggagatttatcagaagatgagcaagagct
ttcagatgctctagaggaacctcaggaatcaccgtcaacatcaacagaatcccaagtatc
ggaagacgaagagccatgttgttcgacggaccctgcttcaaccacgtcacgtcgccgacg
tatacgttccccgaaatccgagagcgccaaaaaaccgcgaaaatcatcgagtcccccgct
agacgattatttgaaagaaatggcagttcgccaaaatcacgaacagcgcgccatccacct
tcgccaacgtagaaatctggaaatcgccggtgccgacggtgtctatcagcgaataatcga
tgagcttccacttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGTAGACTCCGAAATTTTCCAT 252 705 1383 Antisense
GATTAATCATGATAGACCCCGCCAT 84 431 1452 Antisense
TCGCATACTTTCCTCGATAGCTCGA 94 601 1479 Antisense
GAGGAACCTCAGGAATCACCGTCAA 432 403 1636 Antisense
CACCGTCAACATCAACAGAATCCCA 335 201 1652 Antisense
GAAGAGCCATGTTGTTCGACGGACC 597 337 1690 Antisense
TCACGTCGCCGACGTATACGTTCCC 474 625 1729 Antisense
GTCCCCCGCTAGACGATTATTTGAA 312 475 1793 Antisense
ATCCACCTTCGCCAACGTAGAAATC 310 37 1855 Antisense
TGCCGACGGTGTCTATCAGCGAATA 494 585 1893 Antisense
AATAATCGATGAGCTTCCACTTCCA 692 171 1914 Antisense
Sequence Source Affymetrix Proprietary Database