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[178454_at]

Description C17E4.4 /REP_DB=WormBase Gene ID /WP=CE08253 /TR=Q93229 /GB=CAB02746.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 7.2
(-3)
A 		48.1
(-0.5)
A 		11.6
(-2.7)
A 		106
(3)
A 		99
B 23.2
(-3)
A 		24.8
(-2.9)
A 		29.3
(-2.5)
A 		95.4
(3)
A 		72
C 4.9
(-3)
A 		12.5
(-2.7)
A 		36.4
(-1.9)
A 		170.7
(3)
P 		166
avr 11.8
(-3) 		28.5
(-2.1) 		25.8
(-2.3) 		124
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 36.2
(-2.5)
A 		3.8
(-3)
A 		71.3
(-1.9)
P 		66.9
(-2)
P 		271.3
(1.3)
P 		375.6
(3)
P 		372
B 24
(-2.7)
A 		5.2
(-3)
A 		70.5
(-2)
A 		77.3
(-1.9)
P 		242.5
(0.5)
P 		410.2
(3)
P 		405
C 6.3
(-3)
A 		35.7
(-2.7)
A 		71.4
(-2.3)
A 		77.2
(-2.2)
P 		240.9
(-0.4)
P 		549.2
(3)
P 		543
avr 22.2
(-2.9) 		14.9
(-3) 		71.1
(-2.2) 		73.8
(-2.2) 		251.6
(0.3) 		445
(3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 2.6
(-3)
A 		10.4
(0.6)
A 		3
(-2.8)
A 		15.5
(3)
A 		13
B 7.4
(-2.5)
A 		6.1
(-3)
A 		6.8
(-2.7)
A 		20.3
(3)
A 		14
C 1.6
(-3)
A 		3.6
(-2.6)
A 		12.7
(-0.6)
A 		28.8
(3)
P 		27
avr 3.9
(-3) 		6.7
(-2) 		7.5
(-1.8) 		21.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 6.7
(-2.6)
A 		1.4
(-3)
A 		15.5
(-2.1)
P 		17
(-2)
P 		81.9
(2.4)
P 		91.4
(3)
P 		90
B 8.3
(-2.7)
A 		1.7
(-3)
A 		17.1
(-2.4)
A 		20.5
(-2.3)
P 		98.5
(0.8)
P 		152.9
(3)
P 		151
C 2.3
(-3)
A 		10.9
(-2.7)
A 		18.2
(-2.5)
A 		15.5
(-2.6)
P 		78
(-0.5)
P 		183.8
(3)
P 		182
avr 5.8
(-3) 		4.7
(-3) 		16.9
(-2.5) 		17.7
(-2.4) 		86.1
(0.5) 		142.7
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1192
Sequence Type Exemplar sequence
Representative Public ID C17E4.4 NCBI
Target Description C17E4.4 /REP_DB=WormBase Gene ID /WP=CE08253 /TR=Q93229 /GB=CAB02746.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060102 NCBI Caenorhabditis elegans C17E4.4 (C17E4.4) mRNA, complete cds. 11/11 None
SNAP00000000950 ENSEMBL cdna:SNAP chromosome:CEL140:I:9427612:9428081:1 11/11 None
GENEFINDER00000000960 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9427612:9428081:1 11/11 None
C17E4.4 ENSEMBL cdna:known chromosome:CEL140:I:9427612:9428081:1 gene:C17E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9427542-9428012(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E4.4
Entrez Gene 182725 Entrez gene
SwissProt Q93229 EMBL-EBI
WormBase CE08253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02746 Hypothetical protein C17E4.4 [Caenorhabditis elegans] ref|NP_492503.1| C17E4.4 [Caenorhabditis elegans] 7.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492503.1 1 78-100
C17E4.4 1 78-100
SNAP00000000950 1 78-100
GENEFINDER00000000960 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:178454_AT
ggttcttccaactgaaattccaccaataaatcaatcaagtgttctaattgatctcaaaaa
gcgaacaactagctcaatagaagccaaggaagatccaatgaacaccgcattctacgaacc
tgaagactttgaagccgaaattgagctatgcatcagtaagcgtacaattcaagaaaagaa
atcagattattgggaggataaactcgattcattcaataaaaaacatccatttctgatgct
ccactttgctccagtggtcttccagctttttctgattgccctcaccacactgtttctgaa
caaagcaggggtcacagattctattgataagctagctgcacatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCTTCCAACTGAAATTCCACCA 420 505 15 Antisense
GGAAGATCCAATGAACACCGCATTC 298 531 102 Antisense
CACCGCATTCTACGAACCTGAAGAC 351 201 117 Antisense
GAACCTGAAGACTTTGAAGCCGAAA 415 345 130 Antisense
GAGCTATGCATCAGTAAGCGTACAA 710 387 157 Antisense
GAGGATAAACTCGATTCATTCAATA 369 403 208 Antisense
AACATCCATTTCTGATGCTCCACTT 142 137 236 Antisense
GGTCTTCCAGCTTTTTCTGATTGCC 499 503 270 Antisense
CCTCACCACACTGTTTCTGAACAAA 210 269 294 Antisense
AAAGCAGGGGTCACAGATTCTATTG 278 115 316 Antisense
TATTGATAAGCTAGCTGCACATCTG 550 663 336 Antisense
Sequence Source Affymetrix Proprietary Database