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[178453_at]

Description F11A5.7 /REP_DB=WormBase Gene ID /WP=CE15785 /TR=O17791 /GB=CAB07359.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 6.4
(-2.4)
A 		2.4
(-3)
A 		16.6
(-0.8)
A 		41.5
(3)
A 		39
B 21.8
(2.4)
A 		23.5
(3)
A 		5.9
(-3)
A 		19.6
(1.7)
A 		18
C 34.1
(3)
A 		31.9
(2.3)
A 		15.9
(-3)
A 		26
(0.3)
A 		18
avr 20.8
(-0) 		19.3
(-0.6) 		12.8
(-3) 		29
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.1
(-1.8)
A 		5.7
(-1.9)
A 		25.3
(3)
A 		2.9
(-2.6)
A 		1.1
(-3)
A 		24.3
(2.8)
A 		24
B 4.2
(-2.2)
A 		14.4
(0.5)
A 		1.3
(-3)
A 		21.3
(2.3)
A 		24
(3)
A 		19.1
(1.7)
P 		23
C 18
(-1.3)
A 		15.1
(-3)
A 		25.6
(3)
A 		21.1
(0.4)
A 		24.2
(2.2)
P 		20.9
(0.3)
A 		11
avr 9.4
(-3) 		11.7
(-1.9) 		17.4
(1) 		15.1
(-0.2) 		16.4
(0.5) 		21.4
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.3
(-1.1)
A 		0.5
(-3)
A 		4.3
(1.1)
A 		6.1
(3)
A 		6
B 6.9
(3)
A 		5.8
(1.8)
A 		1.4
(-3)
A 		4.2
(0.1)
A 		6
C 11.3
(3)
A 		9.2
(1.2)
A 		5.5
(-2)
A 		4.4
(-3)
A 		7
avr 6.8
(3) 		5.2
(-0.1) 		3.7
(-3) 		4.9
(-0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-2.1)
A 		2
(-1.2)
A 		5.5
(2.6)
A 		0.7
(-2.6)
A 		0.3
(-3)
A 		5.9
(3)
A 		6
B 1.5
(-2.2)
A 		4.8
(-0.1)
A 		0.3
(-3)
A 		5.6
(0.4)
A 		9.7
(3)
A 		7.1
(1.3)
P 		9
C 6.7
(1.2)
A 		4.6
(-2.3)
A 		6.5
(0.8)
A 		4.2
(-3)
A 		7.8
(3)
P 		7
(1.7)
A 		4
avr 3.1
(-3) 		3.8
(-1.8) 		4.1
(-1.3) 		3.5
(-2.3) 		5.9
(1.7) 		6.7
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14360
Sequence Type Exemplar sequence
Representative Public ID F11A5.7 NCBI
Target Description F11A5.7 /REP_DB=WormBase Gene ID /WP=CE15785 /TR=O17791 /GB=CAB07359.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074686 NCBI Caenorhabditis elegans F11A5.7 (F11A5.7) mRNA, complete cds. 11/11 None
SNAP00000026999 ENSEMBL cdna:SNAP chromosome:CEL140:V:16208405:16209401:1 11/11 None
GENEFINDER00000027017 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16207771:16209401:1 11/11 None
F11A5.7 ENSEMBL cdna:known chromosome:CEL140:V:16207771:16209401:1 gene:F11A5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16207770-16209401(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A5.7
Entrez Gene 184334 Entrez gene
SwissProt O17791 EMBL-EBI
WormBase CE35462 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07359 Hypothetical protein F11A5.7 [Caenorhabditis elegans] ref|NP_507087.2| F11A5.7 [Caenorhabditis elegans] 0.0
blast CAB07359 Hypothetical protein F11A5.7 [Caenorhabditis elegans] ref|NP_507087.2| F11A5.7 [Caenorhabditis elegans] 1.0E-108
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 1.0E-85
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 3.0E-83
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 1.0E-78
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 2.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.1E-4
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.0E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-18
Sequence
Target Sequence 
>C. ELEGANS:178453_AT
ggaatgtcaacttggatgcacgttttggaacatattgtactccgacaaaaactgaaaagc
tctgcatgcctcctcaaatgtgtttgagagtttttggtgatttggaaattggttcaggtt
ccgacttgaactcgatgaagtctgttcagataattttcggcagtttgattattaacagaa
ccaacttgaccaacttcaactttttggaaaatttgaagtacgtagcacagatgcagaaag
acaaatctgctatcattgtggaaaagaacctcgatcttgtcaatatttcctttccaaaat
taaagcgcgtgcgatccgacaatttacactcaatagttttcactggaaataatcaaaata
cgagtcgggacgtggacggctgcatccgtttggcagacgatctgggcctatttaaaagct
ggtcgccaatttttgatggtaaagattgtagtgagtactttccaaaatttaaccgtcaat
gtcaatgtctattttcagtaacgatgaatttcacagttcactggcctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGTCAACTTGGATGCACGTTT 209 533 575 Antisense
AACTGAAAAGCTCTGCATGCCTCCT 269 143 624 Antisense
TGCATGCCTCCTCAAATGTGTTTGA 219 577 637 Antisense
GAAATTGGTTCAGGTTCCGACTTGA 210 359 679 Antisense
CGATCTTGTCAATATTTCCTTTCCA 465 247 846 Antisense
GCGATCCGACAATTTACACTCAATA 704 289 885 Antisense
ATACGAGTCGGGACGTGGACGGCTG 292 5 932 Antisense
GGCTGCATCCGTTTGGCAGACGATC 394 539 952 Antisense
GCAGACGATCTGGGCCTATTTAAAA 474 311 967 Antisense
GCTGGTCGCCAATTTTTGATGGTAA 395 295 992 Antisense
GAATTTCACAGTTCACTGGCCTGAG 354 325 1080 Antisense
Sequence Source Affymetrix Proprietary Database