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[178448_at]

Description C03D6.1 /REP_DB=WormBase Gene ID /WP=CE05195 /TR=Q17600 /GB=CAA99766.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_total > 40      4grp_total > 38      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 603
1 2 3 4 range
A 637.3
(3)
P 		280.2
(-2.4)
P 		239.4
(-3)
P 		302.3
(-2.1)
P 		398
B 638.8
(3)
P 		320.3
(-1)
P 		156
(-3)
P 		335.2
(-0.8)
P 		483
C 759.4
(3)
P 		307.9
(-2.6)
P 		276.5
(-3)
P 		305.6
(-2.6)
P 		483
avr 678.5
(3) 		302.8
(-2) 		224
(-3) 		314.4
(-1.8) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 206.3
(1.3)
P 		202.3
(1.1)
P 		253.6
(3)
P 		203.6
(1.2)
P 		147.4
(-0.9)
M 		91.1
(-3)
A 		163
B 203.9
(-0)
P 		235.5
(1)
P 		293.4
(3)
P 		204.4
(-0)
P 		119.6
(-2.9)
P 		116
(-3)
P 		177
C 198.4
(-0.2)
P 		211.6
(0.3)
P 		292.8
(3)
P 		283.9
(2.7)
P 		113.3
(-3)
A 		133.3
(-2.3)
P 		180
avr 202.9
(0.2) 		216.5
(0.7) 		279.9
(3) 		230.6
(1.2) 		126.8
(-2.5) 		113.5
(-3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 232
(3)
P 		60.8
(-2.5)
P 		62.6
(-2.4)
P 		44.2
(-3)
P 		188
B 203.7
(3)
P 		79.1
(-1.5)
P 		36.1
(-3)
P 		71.4
(-1.7)
P 		168
C 251.4
(3)
P 		88.5
(-1.9)
P 		96.4
(-1.7)
P 		51.5
(-3)
P 		200
avr 229
(3) 		76.1
(-2.3) 		65
(-2.7) 		55.7
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 38
(-1.1)
P 		72
(3)
P 		55.2
(1)
P 		51.6
(0.5)
P 		44.5
(-0.3)
M 		22.2
(-3)
A 		50
B 71
(1.7)
P 		78.4
(3)
P 		71.3
(1.8)
P 		54.1
(-1.2)
P 		48.6
(-2.1)
P 		43.3
(-3)
P 		35
C 73.5
(2.8)
P 		64.6
(1.4)
P 		74.5
(3)
P 		57.1
(0.2)
P 		36.7
(-3)
A 		44.6
(-1.7)
P 		38
avr 60.8
(1.1) 		71.7
(3) 		67
(2.2) 		54.3
(0) 		43.3
(-1.9) 		36.7
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1178
Sequence Type Exemplar sequence
Representative Public ID C03D6.1 NCBI
Target Description C03D6.1 /REP_DB=WormBase Gene ID /WP=CE05195 /TR=Q17600 /GB=CAA99766.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060170 NCBI Caenorhabditis elegans C03D6.1 (C03D6.1) mRNA, complete cds. 11/11 None
SNAP00000028822 ENSEMBL cdna:SNAP chromosome:CEL140:I:9676834:9678836:-1 11/11 None
C03D6.1 ENSEMBL cdna:known chromosome:CEL140:I:9676834:9678836:-1 gene:C03D6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028825 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028826 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9676764-9678767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03D6.1
Entrez Gene 182158 Entrez gene
SwissProt Q17600 EMBL-EBI
WormBase CE05195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99766 Hypothetical protein C03D6.1 [Caenorhabditis elegans] ref|NP_492571.1| C03D6.1 [Caenorhabditis elegans] 1.0E-154
blast CAE60151 Hypothetical protein CBG03701 [Caenorhabditis briggsae] 1.0E-104
blast CAE60199 Hypothetical protein CBG03760 [Caenorhabditis briggsae] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:178448_AT
attcaacggaacctcgtgtcctgatcattttaccgagtactttcatttccaaaaggccac
cattccgcatgttgatcctgcgctgattcgacgagtcactcggtggataattgaagactt
cagatcccatcgtgaagtgctccctgattttattattgtgctccgagatcaagttcgcga
tgatctacaatcaacggtagaacatcaagagttcacagctttcaaagaagaaatatcaac
atatatagagactgcatcaaatcttccagaatggaatcctcgatttgcatttggattggc
tccatggcgaccagaaaatacggaaccactcgtttatttgtttcaagatgacggaatttt
ccaatcaaacgaagaatttcaaaacttaattgttaacatgtttataacaattagagttcg
taatcatcgattttctcttcttgaacctctttggaatgctgaaaacaaagctggactgtg
gactaaattttttcccagttacgcagctttcagagaagcacacaacaatgctctacctcg
aattgctaactcttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAACGGAACCTCGTGTCCTGAT 634 3 192 Antisense
GTGTCCTGATCATTTTACCGAGTAC 630 487 207 Antisense
TCATTTCCAAAAGGCCACCATTCCG 39 619 234 Antisense
CATTCCGCATGTTGATCCTGCGCTG 348 215 252 Antisense
TCCTGCGCTGATTCGACGAGTCACT 679 593 267 Antisense
TTGAAGACTTCAGATCCCATCGTGA 614 703 302 Antisense
TCGTGAAGTGCTCCCTGATTTTATT 30 603 321 Antisense
ATTTGGATTGGCTCCATGGCGACCA 270 17 480 Antisense
TTTCTCTTCTTGAACCTCTTTGGAA 597 671 623 Antisense
TTTTCCCAGTTACGCAGCTTTCAGA 387 677 681 Antisense
CTACCTCGAATTGCTAACTCTTCTC 584 223 724 Antisense
Sequence Source Affymetrix Proprietary Database