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[178447_s_at]

Description K08C9.2 /REP_DB=WormBase Gene ID /WP=CE18859 /TR=Q9XUT6 /GB=CAB04585.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 7.4
(-1.6)
A 		5.2
(-3)
A 		5.3
(-2.9)
A 		14.8
(3)
A 		10
B 4.9
(-2.5)
A 		3.3
(-3)
A 		5.7
(-2.3)
A 		23.8
(3)
A 		21
C 4
(-3)
A 		4.8
(-2.3)
A 		11.2
(3)
A 		8.4
(0.7)
A 		7
avr 5.4
(-2.5) 		4.4
(-3) 		7.4
(-1.4) 		15.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 10.8
(-2.9)
A 		3.2
(-3)
A 		4.2
(-3)
A 		16.4
(-2.9)
A 		181.8
(-1.1)
P 		575.1
(3)
P 		572
B 16.7
(-2.7)
A 		2.3
(-3)
A 		20.3
(-2.7)
A 		21.3
(-2.6)
A 		199.3
(0.8)
P 		312
(3)
P 		310
C 1.8
(-3)
A 		2.4
(-3)
A 		2.9
(-3)
A 		3.7
(-3)
A 		144.9
(-0.3)
P 		323.7
(3)
P 		322
avr 9.8
(-2.9) 		2.6
(-3) 		9.1
(-2.9) 		13.8
(-2.8) 		175.3
(-0.4) 		403.6
(3) 		401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.7
(3)
A 		1.1
(-3)
A 		1.4
(-1.9)
A 		2.2
(1.1)
A 		2
B 1.6
(-1.9)
A 		0.8
(-3)
A 		1.3
(-2.3)
A 		5.1
(3)
A 		4
C 1.3
(-3)
A 		1.4
(-2.8)
A 		3.9
(3)
A 		1.4
(-2.8)
A 		3
avr 1.9
(-0.3) 		1.1
(-3) 		2.2
(0.7) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 2
(-3)
A 		1.1
(-3)
A 		0.9
(-3)
A 		4.2
(-2.9)
A 		54.8
(-0.7)
P 		140
(3)
P 		139
B 5.8
(-2.7)
A 		0.8
(-3)
A 		4.9
(-2.8)
A 		5.7
(-2.7)
A 		81
(1.2)
P 		116.3
(3)
P 		116
C 0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		46.9
(-0.4)
P 		108.4
(3)
P 		108
avr 2.8
(-2.9) 		0.9
(-3) 		2.2
(-2.9) 		3.5
(-2.9) 		60.9
(-0) 		121.6
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178447_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2349
Sequence Type Exemplar sequence
Representative Public ID K08C9.2 NCBI
Target Description K08C9.2 /REP_DB=WormBase Gene ID /WP=CE18859 /TR=Q9XUT6 /GB=CAB04585.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060534 NCBI Caenorhabditis elegans K08C9.2 (K08C9.2) mRNA, complete cds. 11/11 None
SNAP00000013575 ENSEMBL cdna:SNAP chromosome:CEL140:I:11493188:11496517:-1 11/11 None
GENEFINDER00000013582 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11495075:11496937:-1 11/11 None
K08C9.2 ENSEMBL cdna:known chromosome:CEL140:I:11495075:11496554:-1 gene:K08C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11495005-11496448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C9.2
Entrez Gene 173035 Entrez gene
SwissProt Q9XUT6 EMBL-EBI
WormBase CE18859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04585 Hypothetical protein K08C9.2 [Caenorhabditis elegans] ref|NP_492935.1| K08C9.2 [Caenorhabditis elegans] 1.0E-139
blast CAB04585 Hypothetical protein K08C9.2 [Caenorhabditis elegans] ref|NP_492935.1| K08C9.2 [Caenorhabditis elegans] 1.0E-138
blast CAB04586 Hypothetical protein K08C9.1 [Caenorhabditis elegans] ref|NP_492934.1| K08C9.1 [Caenorhabditis elegans] 1.0E-132
blast CAB04585 Hypothetical protein K08C9.2 [Caenorhabditis elegans] ref|NP_492935.1| K08C9.2 [Caenorhabditis elegans] 1.0E-129
blast CAE74722 Hypothetical protein CBG22538 [Caenorhabditis briggsae] 4.0E-82
blast CAE74722 Hypothetical protein CBG22538 [Caenorhabditis briggsae] 6.0E-82
blast CAE74722 Hypothetical protein CBG22538 [Caenorhabditis briggsae] 3.0E-77
blast CAB04586 Hypothetical protein K08C9.1 [Caenorhabditis elegans] ref|NP_492934.1| K08C9.1 [Caenorhabditis elegans] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178447_S_AT
caaaaagccgcacgtgttgcctagcgccgaagccgcctaccatgccgtgtaccacgagct
cgactctgtaaaatccggaaaccgcgacgaaaaggtgttcggacagctgtatgtggcgct
gatcgaggatcaattcacgtttggcggcgatctttcgacgtggcccgactcggcgttcca
gaagggagatcggggctgcaaaccgtttatggcggcgaatttgcacaatttatgcaataa
cgagtactttttggtgcatcaggatatgatcaaacttgtcaagacggtgttcgaaaggaa
aaaccaggccgatccatcttttgacactatttgtttggcgaacaacggattcgttgtctc
tgacgatccggagaatcatctggtctacagatataagcatcgcattccgatgacctataa
ggcaacctcaaacgaccaaaagtgtttcggaacttatgatacccgtacggacacgttcac
ctgcatgcgatacgacgcttccaccaaaaagatgtccccattcgaattgcaaaacttttt
gtggaaggaaaatactggcacattccatctcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAAGCCGCACGTGTTGCCTAGC 402 191 96 Antisense
TGTACCACGAGCTCGACTCTGTAAA 655 559 143 Antisense
GTGTTCGGACAGCTGTATGTGGCGC 546 485 190 Antisense
AATTCACGTTTGGCGGCGATCTTTC 57 177 227 Antisense
GGCTGCAAACCGTTTATGGCGGCGA 153 539 289 Antisense
CCGATCCATCTTTTGACACTATTTG 476 263 404 Antisense
ATTCGTTGTCTCTGACGATCCGGAG 2 9 444 Antisense
TGATACCCGTACGGACACGTTCACC 187 565 552 Antisense
GTTCACCTGCATGCGATACGACGCT 614 443 570 Antisense
AAAGATGTCCCCATTCGAATTGCAA 22 121 603 Antisense
AAATACTGGCACATTCCATCTCGGA 186 117 645 Antisense
Sequence Source Affymetrix Proprietary Database