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[178446_at]

Description W02D9.8 /REP_DB=WormBase Gene ID /WP=CE14468 /TR=Q9XVG5 /GB=CAB03468.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.5
(-3)
A 		4.7
(3)
A 		4.2
(2.1)
A 		3.2
(0.2)
A 		3
B 3.4
(-3)
A 		4.4
(0.5)
A 		3.7
(-1.9)
A 		5.1
(3)
A 		2
C 2.1
(-3)
A 		4.1
(2.5)
A 		2.8
(-1.1)
A 		4.3
(3)
A 		2
avr 2.3
(-3) 		4.4
(3) 		3.6
(0.7) 		4.2
(2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.4
(-2.6)
A 		2.6
(-3)
A 		2.7
(-2.9)
A 		3.4
(-2.6)
A 		16.7
(3)
A 		2.5
(-3)
A 		14
B 2.8
(-2.4)
A 		2.6
(-2.6)
A 		7
(2)
A 		8
(3)
A 		2.2
(-3)
A 		2.4
(-2.8)
A 		6
C 5.1
(2.8)
A 		2.5
(-1.9)
A 		3.4
(-0.3)
A 		3.5
(-0.1)
A 		1.9
(-3)
A 		5.2
(3)
A 		3
avr 3.8
(-1.3) 		2.6
(-3) 		4.4
(-0.5) 		5
(0.3) 		6.9
(3) 		3.4
(-1.9) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-2)
A 		1
(2)
A 		1.1
(3)
A 		0.5
(-3)
A 		1
B 1.1
(3)
A 		1.1
(3)
A 		0.9
(-3)
A 		1.1
(3)
A 		0
C 0.7
(-3)
A 		1.2
(3)
A 		1
(0.6)
A 		0.7
(-3)
A 		1
avr 0.8
(-3) 		1.1
(3) 		1
(1) 		0.8
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.9
(-2.6)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		5
(3)
A 		0.6
(-3)
A 		4
B 1
(-2.5)
A 		0.9
(-3)
A 		1.7
(1)
A 		2.1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
C 1.9
(3)
A 		0.8
(-2.1)
A 		0.9
(-1.6)
A 		0.7
(-2.5)
A 		0.6
(-3)
A 		1.7
(2.1)
A 		1
avr 1.2
(-1.6) 		0.9
(-3) 		1.1
(-2.1) 		1.2
(-1.6) 		2.2
(3) 		1.1
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1168
Sequence Type Exemplar sequence
Representative Public ID W02D9.8 NCBI
Target Description W02D9.8 /REP_DB=WormBase Gene ID /WP=CE14468 /TR=Q9XVG5 /GB=CAB03468.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060781 NCBI Caenorhabditis elegans W02D9.8 (W02D9.8) mRNA, complete cds. 11/11 None
W02D9.8 ENSEMBL cdna:known chromosome:CEL140:I:12566668:12567065:1 gene:W02D9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003943 5/11 Cross Hyb Matching Probes None
SNAP00000003937 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12566598-12566996(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D9.8
Entrez Gene 189122 Entrez gene
SwissProt Q9XVG5 EMBL-EBI
WormBase CE14468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03468 Hypothetical protein W02D9.8 [Caenorhabditis elegans] ref|NP_493182.1| W02D9.8 [Caenorhabditis elegans] 8.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493182.1 2 12-34,59-81
W02D9.8 2 12-34,59-81
Sequence
Target Sequence 
>C. ELEGANS:178446_AT
gaattctcctctgtgcgaagatcgttctactcacgtctgtttttattgctgtgattgttg
tgttcctgtgcgccttcttcaactttggaggcctaccgcaaagagctcgtggtaaagttt
ttttcagaactgattccgcgcggatgcataactgccgaagtctcattctcgatgtggcca
agat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTCCTCTGTGCGAAGATCGT 178 325 26 Antisense
GAAGATCGTTCTACTCACGTCTGTT 197 339 42 Antisense
TACTCACGTCTGTTTTTATTGCTGT 707 645 53 Antisense
TGCTGTGATTGTTGTGTTCCTGTGC 342 583 72 Antisense
TCAACTTTGGAGGCCTACCGCAAAG 291 629 104 Antisense
GGCCTACCGCAAAGAGCTCGTGGTA 544 541 115 Antisense
GAGCTCGTGGTAAAGTTTTTTTCAG 100 383 128 Antisense
TTTTTCAGAACTGATTCCGCGCGGA 30 675 145 Antisense
ATTCCGCGCGGATGCATAACTGCCG 42 3 158 Antisense
GCATAACTGCCGAAGTCTCATTCTC 227 309 171 Antisense
GTCTCATTCTCGATGTGGCCAAGAT 616 469 185 Antisense
Sequence Source Affymetrix Proprietary Database