[Home] | [Total List]

[178445_at] 7TM receptor, srbc family

Description M01B2.4 /REP_DB=WormBase Gene ID /WP=CE16266 /TR=O17958 /GB=CAB05562.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 26      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2.2
(-3)
A 		4.1
(-1.3)
A 		8.8
(3)
A 		3.5
(-1.8)
A 		7
B 4.9
(-3)
A 		6.8
(-1.6)
A 		11.4
(1.8)
A 		13.1
(3)
A 		8
C 2.9
(-3)
A 		31.4
(1)
A 		3.6
(-2.9)
A 		46
(3)
A 		43
avr 3.3
(-3) 		14.1
(0.7) 		7.9
(-1.4) 		20.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 50
(3)
A 		2.3
(-3)
A 		33
(0.9)
A 		8
(-2.3)
A 		12.2
(-1.8)
A 		3.5
(-2.8)
A 		48
B 8.7
(-1.5)
A 		8.5
(-1.6)
A 		32.8
(3)
A 		0.9
(-3)
A 		20.7
(0.7)
A 		3.4
(-2.5)
A 		32
C 11.4
(-0.3)
A 		23
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		2.6
(-2.7)
A 		2.6
(-2.7)
A 		21
avr 23.4
(3) 		11.3
(-0.6) 		22.5
(2.7) 		3.5
(-2.9) 		11.8
(-0.4) 		3.2
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-2)
A 		0.9
(-1.7)
A 		2.3
(3)
A 		0.5
(-3)
A 		2
B 1.6
(-3)
A 		1.7
(-2.5)
A 		2.6
(2)
A 		2.8
(3)
A 		1
C 1
(-3)
A 		9
(3)
A 		1.3
(-2.8)
A 		7.8
(2.1)
A 		8
avr 1.1
(-3) 		3.9
(3) 		2.1
(-0.9) 		3.7
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.2
(3)
A 		0.8
(-3)
A 		7.2
(1.6)
A 		2
(-2.1)
A 		3.7
(-0.9)
A 		0.8
(-3)
A 		8
B 3
(-1)
A 		2.8
(-1.1)
A 		8
(2.7)
A 		0.2
(-3)
A 		8.4
(3)
A 		1.3
(-2.2)
A 		8
C 4.2
(0.5)
A 		7
(3)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		0.9
(-2.5)
A 		7
avr 5.5
(3) 		3.5
(0.4) 		5.2
(2.6) 		0.8
(-3) 		4.3
(1.5) 		1
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14619
Sequence Type Exemplar sequence
Representative Public ID M01B2.4 NCBI
Target Description M01B2.4 /REP_DB=WormBase Gene ID /WP=CE16266 /TR=O17958 /GB=CAB05562.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074373 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-76) (srbc-76) mRNA, complete cds. 11/11 A 
M01B2.4 ENSEMBL cdna:known chromosome:CEL140:V:15254968:15255877:1 gene:M01B2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15254967-15255877(+) 100.0 100.0
chrV:15807421-15808334(+) 95.25 95.25
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-76
Ensembl M01B2.4
Entrez Gene 187355 Entrez gene
SwissProt O17958 EMBL-EBI
WormBase CE16266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05562 Hypothetical protein M01B2.4 [Caenorhabditis elegans] ref|NP_506774.1| Serpentine Receptor, class BC (class B-like) family member (srbc-76) [Caenorhabditis elegans] 1.0E-146
blast T25314 hypothetical protein T26E4.13 - Caenorhabditis elegans 1.0E-106
blast CAB05561 Hypothetical protein M01B2.3 [Caenorhabditis elegans] ref|NP_506775.1| Serpentine Receptor, class BC (class B-like) family member (srbc-75) [Caenorhabditis elegans] 7.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506774.1 7 10-32,45-67,82-104,125-144,179-201,214-233,248-270
M01B2.4 7 10-32,45-67,82-104,125-144,179-201,214-233,248-270
Sequence
Target Sequence 
>C. ELEGANS:178445_AT
aattttggcactttcaatatctattgagagagtttttgcaactttcatcccagtttattt
ccataagtatcggagtaaatttccaaatcttctagttctctgcattattttggccaaggg
atttctcgatcaatatatactttttggattttgtggtaatgatatcgatgcacctttgga
gtgtaatggtattttctgtgctgtaaacagttgctataactcgttttatttctcaagcga
gctgggtgtgtattttgtaaatggagctttttcggctactttatttttccgatttttcat
ttggaattatttttcaaaaatgcaaaaaaactgtataatttctagagccacccgcattgc
acttctcgattttttcatactgttatttttcaatgttctctcttcacattttgttaacaa
tttaagaattgtcaatataagagaagtcggaccattaacagttgccacgaagatgtttgg
atttgttattgaaggattgataacttgccgagtcttatttggtgggaaactcgtgtctac
ttttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTGGCACTTTCAATATCTATT 549 175 300 Antisense
TATTTTGGCCAAGGGATTTCTCGAT 318 661 405 Antisense
GATATCGATGCACCTTTGGAGTGTA 424 425 460 Antisense
GAGCTGGGTGTGTATTTTGTAAATG 387 387 538 Antisense
ATGGAGCTTTTTCGGCTACTTTATT 3 53 560 Antisense
CTGTATAATTTCTAGAGCCACCCGC 621 237 630 Antisense
GCACTTCTCGATTTTTTCATACTGT 135 317 658 Antisense
GAAGGATTGATAACTTGCCGAGTCT 236 335 790 Antisense
TAACTTGCCGAGTCTTATTTGGTGG 664 635 800 Antisense
TTTGGTGGGAAACTCGTGTCTACTT 178 609 817 Antisense
TGGGAAACTCGTGTCTACTTTTGTT 590 551 822 Antisense
Sequence Source Affymetrix Proprietary Database