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[178444_at]

Description ZC302.3 /REP_DB=WormBase Gene ID /WP=CE06575 /TR=Q23257 /GB=CAA98294.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 5.2
(-3)
A 		17.8
(0.5)
A 		26.8
(3)
A 		17.1
(0.3)
A 		22
B 27.7
(2)
A 		29.7
(3)
A 		22.6
(-0.5)
A 		17.4
(-3)
A 		12
C 32.4
(0.8)
A 		6
(-3)
A 		28.3
(0.2)
A 		47.3
(3)
A 		41
avr 21.8
(-0.5) 		17.8
(-3) 		25.9
(2.1) 		27.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 8.2
(-3)
A 		20.6
(-1.9)
A 		24.6
(-1.6)
A 		68.5
(2.3)
P 		76.4
(3)
P 		43
(0.1)
A 		68
B 6.1
(-3)
A 		33.4
(-0.6)
A 		29.5
(-0.9)
A 		9.6
(-2.7)
A 		73.5
(3)
M 		52.2
(1.1)
A 		67
C 20.1
(-2.5)
A 		58.1
(0.3)
A 		13.1
(-3)
A 		93.7
(3)
P 		64.4
(0.8)
A 		48.6
(-0.4)
A 		81
avr 11.5
(-3) 		37.4
(-0.4) 		22.4
(-1.9) 		57.3
(1.6) 		71.4
(3) 		47.9
(0.6) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.9
(-3)
A 		3.9
(-0.6)
A 		7
(3)
A 		2.5
(-2.3)
A 		5
B 8.8
(3)
A 		7.3
(1.2)
A 		5.2
(-1.2)
A 		3.7
(-3)
A 		5
C 10.7
(3)
A 		1.7
(-3)
A 		9.8
(2.4)
A 		8
(1.2)
A 		9
avr 7.1
(2.6) 		4.3
(-3) 		7.3
(3) 		4.7
(-2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.5
(-3)
A 		7.3
(-1.4)
A 		5.3
(-1.9)
A 		17.4
(1.4)
P 		23.1
(3)
P 		10.5
(-0.5)
A 		22
B 2.1
(-3)
A 		11.1
(-1.1)
A 		7.2
(-1.9)
A 		2.5
(-2.9)
A 		29.9
(3)
M 		19.5
(0.8)
A 		28
C 7.5
(-1.6)
A 		17.7
(1.9)
A 		3.3
(-3)
A 		18.8
(2.3)
P 		20.8
(3)
A 		16.3
(1.5)
A 		18
avr 3.7
(-3) 		12
(-0.6) 		5.3
(-2.5) 		12.9
(-0.4) 		24.6
(3) 		15.4
(0.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14705
Sequence Type Exemplar sequence
Representative Public ID ZC302.3 NCBI
Target Description ZC302.3 /REP_DB=WormBase Gene ID /WP=CE06575 /TR=Q23257 /GB=CAA98294.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073337 NCBI Caenorhabditis elegans ZC302.3 (ZC302.3) mRNA, complete cds. 11/11 None
ZC302.3 ENSEMBL cdna:known chromosome:CEL140:V:10741907:10743201:-1 gene:ZC302.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10741906-10743201(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC302.3
Entrez Gene 191136 Entrez gene
SwissProt Q23257 EMBL-EBI
WormBase CE06575 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98294 Hypothetical protein ZC302.3 [Caenorhabditis elegans] ref|NP_505738.1| ZC302.3 [Caenorhabditis elegans] 1.0E-133
blast CAE64877 Hypothetical protein CBG09689 [Caenorhabditis briggsae] 3.0E-69
Sequence
Target Sequence 
>C. ELEGANS:178444_AT
gaagacaactcagattccttggcaaaaaccaggtcatataatgacagaggacgagcaaaa
aatgtggaatgctactagaatgagagaatatcgaagaaaatcaaatgaaactttggaaaa
aagcaagtcaatgctggatggattgaaatcacaatgtacggttaatactgttgtcttgaa
aaatatgttgattactaaatcagtagaagattctgtcaagttgaatgccgcaagattttt
ggggaaaagcgagaaggaattgatggatattccagagattaaacaaatgtttcaacagta
ctggaattgtcgtaaaaccgcatccaattctcattatgaacaacgatcactaatttattt
ggatcgggttgtatctctacaaactgagtatctaaactacaaagcgaatcgaaacgactc
tcgatctccatcacaacttgtgaaaaagatcaaggatgccactatgaaagcagaagctta
cgagttttttatggacgataaaagagttcggaaagtgatcggtgaactgaatgagatcga
ctcaaaattcaaagagaacattggagcatggctcctacaacaactgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACAACTCAGATTCCTTGGCAA 80 341 99 Antisense
GTACGGTTAATACTGTTGTCTTGAA 43 459 254 Antisense
GATTCTGTCAAGTTGAATGCCGCAA 126 433 307 Antisense
GAATGCCGCAAGATTTTTGGGGAAA 617 329 321 Antisense
GGAATTGTCGTAAAACCGCATCCAA 637 533 401 Antisense
ACCGCATCCAATTCTCATTATGAAC 459 89 415 Antisense
ATTTGGATCGGGTTGTATCTCTACA 697 17 455 Antisense
ATCGAAACGACTCTCGATCTCCATC 384 37 506 Antisense
AGATCAAGGATGCCACTATGAAAGC 479 65 545 Antisense
AAGCAGAAGCTTACGAGTTTTTTAT 525 137 566 Antisense
AGCATGGCTCCTACAACAACTGAAA 521 77 663 Antisense
Sequence Source Affymetrix Proprietary Database