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[178443_s_at]

Description F57G4.5 /REP_DB=WormBase Gene ID /WP=CE18770 /TR=Q9XUX8 /GB=CAB04504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 75      6grp_total > 65      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 147.3
(3)
P 		7.8
(-3)
A 		22.6
(-2.4)
A 		121.8
(1.9)
P 		140
B 108.4
(1)
P 		62
(-3)
A 		78.2
(-1.6)
A 		132.4
(3)
P 		70
C 127.9
(2.7)
P 		47.9
(-1.3)
A 		13.3
(-3)
A 		134.2
(3)
P 		121
avr 127.9
(2.9) 		39.2
(-2.9) 		38
(-3) 		129.5
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 72.4
(-3)
A 		135.1
(1.5)
P 		86.9
(-2)
P 		104.8
(-0.7)
P 		89.4
(-1.8)
A 		155.7
(3)
P 		83
B 56.8
(-3)
P 		95.2
(0.1)
P 		94.4
(0.1)
P 		130.4
(3)
P 		70.4
(-1.9)
P 		96.6
(0.2)
P 		74
C 43.9
(-3)
A 		143.7
(2.3)
P 		105.2
(0.3)
P 		156.6
(3)
P 		49.1
(-2.7)
A 		156
(3)
P 		113
avr 57.7
(-3) 		124.7
(2.1) 		95.5
(-0.1) 		130.6
(2.6) 		69.6
(-2.1) 		136.1
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 53.6
(3)
P 		1.7
(-3)
A 		5.9
(-2.5)
A 		17.8
(-1.1)
P 		52
B 34.6
(3)
P 		15.3
(-3)
A 		18.1
(-2.1)
A 		28.2
(1)
P 		19
C 42.4
(3)
P 		13.8
(-1.5)
A 		4.6
(-3)
A 		22.6
(-0.1)
P 		38
avr 43.5
(3) 		10.3
(-2.9) 		9.5
(-3) 		22.9
(-0.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 13.4
(-3)
A 		48.1
(3)
P 		18.9
(-2)
P 		26.6
(-0.7)
P 		27
(-0.6)
A 		37.9
(1.2)
P 		35
B 19.8
(-3)
P 		31.7
(1.4)
P 		22.9
(-1.9)
P 		34.5
(2.4)
P 		28.6
(0.3)
P 		36
(3)
P 		16
C 16.3
(-2.9)
A 		43.9
(1.6)
P 		26.8
(-1.2)
P 		31.5
(-0.4)
P 		15.9
(-3)
A 		52.2
(3)
P 		36
avr 16.5
(-3) 		41.2
(2.8) 		22.9
(-1.5) 		30.9
(0.4) 		23.8
(-1.3) 		42
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178443_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13266
Sequence Type Exemplar sequence
Representative Public ID F57G4.5 NCBI
Target Description F57G4.5 /REP_DB=WormBase Gene ID /WP=CE18770 /TR=Q9XUX8 /GB=CAB04504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075060 NCBI Caenorhabditis elegans F57G4.5 (F57G4.5) mRNA, complete cds. 11/11 A 
SNAP00000009860 ENSEMBL cdna:SNAP chromosome:CEL140:V:17642224:17645227:1 11/11 None
SNAP00000009864 ENSEMBL cdna:SNAP chromosome:CEL140:V:17650381:17653098:-1 11/11 None
GENEFINDER00000009865 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17646595:17651290:-1 11/11 None
GENEFINDER00000009871 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17644513:17646555:1 11/11 None
F57G4.5 ENSEMBL cdna:known chromosome:CEL140:V:17644513:17645423:1 gene:F57G4.5 11/11 A 
F57G4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17648072:17650742:-1 gene:F57G4.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009863 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F57G4.5
F57G4.7
Entrez Gene 186460 Entrez gene
SwissProt Q9XUX8 EMBL-EBI
WormBase CE18770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-143
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 1.0E-135
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 1.0E-133
blast CAB04511 Hypothetical protein F57G4.9 [Caenorhabditis elegans] ref|NP_507463.1| F57G4.9 [Caenorhabditis elegans] 1.0E-132
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 1.0E-126
blast T22867 hypothetical protein F57G4.7 - Caenorhabditis elegans 1.0E-117
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 1.0E-110
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-100
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 4.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-12
Sequence
Target Sequence 
>C. ELEGANS:178443_S_AT
tccgaattctcgttcaatgcaagattatatgtgccgtgcggattccgaatccatatcgac
atccagctcttcagctcttcaaacaaacaaatttccggaagattcttcacatcgaaaaga
ttattcacttccaaaaaatctatataatcaagatgattctctactgcacgattttgaata
cccggaaaggcataagaaggttacttcaacccgccgaattgattctgaaaattcccgaca
aggctctccgattatttttgaagaagatatccaggagtgccctttaacgaaacgaactcc
gaagattcatttgtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGAATTCTCGTTCAATGCAAGAT 405 595 294 Antisense
GATTATATGTGCCGTGCGGATTCCG 404 429 316 Antisense
AGCTCTTCAGCTCTTCAAACAAACA 141 81 358 Antisense
ATTTCCGGAAGATTCTTCACATCGA 197 17 384 Antisense
ATCAAGATGATTCTCTACTGCACGA 156 27 440 Antisense
TACTGCACGATTTTGAATACCCGGA 289 647 455 Antisense
ACTTCAACCCGCCGAATTGATTCTG 139 103 496 Antisense
CTGAAAATTCCCGACAAGGCTCTCC 125 239 518 Antisense
GACAAGGCTCTCCGATTATTTTTGA 403 365 530 Antisense
GATATCCAGGAGTGCCCTTTAACGA 46 427 559 Antisense
CGAACTCCGAAGATTCATTTGTCTA 291 251 586 Antisense
Sequence Source Affymetrix Proprietary Database