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[178442_at]

Description F57G4.5 /REP_DB=WormBase Gene ID /WP=CE18770 /TR=Q9XUX8 /GB=CAB04504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 15.4
(3)
A 		1.6
(-2.7)
A 		0.8
(-3)
A 		14.6
(2.7)
A 		15
B 8.8
(2.1)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		10.1
(3)
A 		9
C 2.9
(-3)
A 		8.2
(-2.4)
A 		6.5
(-2.6)
A 		55.5
(3)
A 		53
avr 9
(-1.5) 		3.7
(-2.8) 		3
(-3) 		26.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2.7
(-2.9)
A 		45.8
(3)
A 		26.5
(0.4)
A 		11.9
(-1.7)
A 		2.1
(-3)
A 		3.4
(-2.8)
A 		44
B 0.7
(-3)
A 		25
(3)
A 		1.2
(-2.9)
A 		12.7
(-0)
A 		15.1
(0.6)
A 		9.1
(-0.9)
A 		24
C 6.5
(-1)
A 		8.6
(-0.2)
A 		8.9
(-0.1)
A 		1.3
(-3)
A 		14.1
(1.9)
A 		17
(3)
A 		16
avr 3.3
(-3) 		26.5
(3) 		12.2
(-0.7) 		8.6
(-1.6) 		10.4
(-1.2) 		9.8
(-1.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.6
(3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		2.1
(-0.9)
A 		5
B 2.8
(3)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		2.2
(1.6)
A 		3
C 0.9
(-3)
A 		2.3
(-2)
A 		2.3
(-2)
A 		9.4
(3)
A 		9
avr 3.1
(0.5) 		1
(-3) 		1
(-3) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.5
(-3)
A 		16.3
(3)
A 		5.8
(-1)
A 		3
(-2.1)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		16
B 0.3
(-3)
A 		8.3
(3)
A 		0.3
(-3)
A 		3.4
(-0.7)
A 		6.1
(1.4)
A 		3.4
(-0.7)
A 		8
C 2.4
(-0.7)
A 		2.6
(-0.4)
A 		2.3
(-0.8)
A 		0.3
(-3)
A 		4.6
(1.8)
A 		5.7
(3)
A 		5
avr 1.1
(-3) 		9.1
(3) 		2.8
(-1.7) 		2.2
(-2.2) 		3.8
(-1) 		3.3
(-1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13266
Sequence Type Exemplar sequence
Representative Public ID F57G4.5 NCBI
Target Description F57G4.5 /REP_DB=WormBase Gene ID /WP=CE18770 /TR=Q9XUX8 /GB=CAB04504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075060 NCBI Caenorhabditis elegans F57G4.5 (F57G4.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000009871 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17644513:17646555:1 9/11 None
F57G4.5 ENSEMBL cdna:known chromosome:CEL140:V:17644513:17645423:1 gene:F57G4.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009860 5/11 Cross Hyb Matching Probes None
SNAP00000009864 5/11 Cross Hyb Matching Probes None
GENEFINDER00000009865 4/11 Cross Hyb Matching Probes None
F57G4.7 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F57G4.5
Entrez Gene 186460 Entrez gene
SwissProt Q9XUX8 EMBL-EBI
WormBase CE18770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04505 Hypothetical protein F57G4.6 [Caenorhabditis elegans] ref|NP_507462.1| F57G4.6 [Caenorhabditis elegans] 1.0E-143
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 1.0E-135
blast CAB04504 Hypothetical protein F57G4.5 [Caenorhabditis elegans] ref|NP_507461.1| F57G4.5 [Caenorhabditis elegans] 1.0E-126
blast T22867 hypothetical protein F57G4.7 - Caenorhabditis elegans 1.0E-83
blast T22867 hypothetical protein F57G4.7 - Caenorhabditis elegans 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178442_AT
attccgacgaagattatgtgagcagaagaattcgcaaagctcgtcaaaaatctcattatt
ttaactccaatcaatattctgcggagaatctgagcagttcagctaggaagtctgcaaaac
ttccgaattctcgttcaatgcaagattatatgtgccgtgcggattccgaatccatatcga
catccagctcttcagctcttcaaacaaacaaatttccggaagattcttcacatcgaaaag
attattcacttccaaaaaatctatataatcaagatgattctctactgcacgattttgaat
acccggaaaggcataagaaggttacttcaacccgccgaattgattctgaaaattcccgac
aaggctctccgattatttttgaagaagatatccaggagtgccctttaacgaaacgaactc
cgaagattcatttgtctaaaggagacagctacaaaaaaatatcgggaccgcaggttgagc
acattattcgtaagatcaaggcgcagccgttagtttggaatcgaaattttacatgtgaac
ttccaggagaagaaacaggacgaatttggtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCGACGAAGATTATGTGAGCAG 681 7 173 Antisense
GCAGAAGAATTCGCAAAGCTCGTCA 208 311 194 Antisense
GCAAAGCTCGTCAAAAATCTCATTA 141 319 206 Antisense
AATCTCATTATTTTAACTCCAATCA 698 169 221 Antisense
TTTAACTCCAATCAATATTCTGCGG 113 673 232 Antisense
ATATCGGGACCGCAGGTTGAGCACA 259 21 631 Antisense
GCAGGTTGAGCACATTATTCGTAAG 163 311 642 Antisense
ATTCGTAAGATCAAGGCGCAGCCGT 515 9 658 Antisense
GGCGCAGCCGTTAGTTTGGAATCGA 167 543 672 Antisense
AAATTTTACATGTGAACTTCCAGGA 561 113 696 Antisense
GAAGAAACAGGACGAATTTGGTGGA 164 313 721 Antisense
Sequence Source Affymetrix Proprietary Database