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[178440_at]

Description F10A3.9 /REP_DB=WormBase Gene ID /WP=CE15775 /TR=O45338 /GB=CAB07343.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 07      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 45.4
(1.3)
M 		14.3
(-3)
A 		45
(1.3)
A 		57.6
(3)
A 		43
B 34.3
(1.5)
A 		42.5
(3)
A 		11.3
(-2.7)
A 		9.9
(-3)
A 		33
C 32.3
(-0.9)
A 		22.3
(-3)
A 		37.7
(0.3)
A 		50.7
(3)
A 		28
avr 37.3
(2) 		26.4
(-3) 		31.3
(-0.7) 		39.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 50.7
(3)
P 		31
(0.2)
A 		9.2
(-2.9)
A 		41.7
(1.7)
A 		38
(1.2)
A 		8.4
(-3)
A 		42
B 43.7
(0.8)
A 		38.8
(-0.2)
A 		54.4
(3)
A 		30.2
(-1.9)
A 		24.9
(-3)
A 		39.1
(-0.1)
A 		30
C 35.4
(-1.7)
A 		65.4
(3)
A 		55.1
(1.4)
A 		35.2
(-1.7)
A 		27
(-3)
A 		39.6
(-1)
M 		38
avr 43.3
(2.3) 		45.1
(3) 		39.6
(1) 		35.7
(-0.5) 		30
(-2.6) 		29
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16.5
(3)
M 		3.1
(-3)
A 		11.8
(0.9)
A 		8.4
(-0.6)
A 		13
B 10.9
(3)
A 		10.5
(2.7)
A 		2.6
(-2.7)
A 		2.1
(-3)
A 		9
C 10.7
(0.9)
A 		6.4
(-3)
A 		13.1
(3)
A 		8.5
(-1.1)
A 		7
avr 12.7
(3) 		6.7
(-2.6) 		9.2
(-0.3) 		6.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.4
(1.7)
P 		11
(2.7)
A 		2
(-3)
A 		10.6
(2.4)
A 		11.5
(3)
A 		2
(-3)
A 		10
B 15.2
(3)
A 		12.9
(1.1)
A 		13.2
(1.3)
A 		8
(-3)
A 		10.1
(-1.3)
A 		14.6
(2.5)
A 		7
C 13.1
(-0.2)
A 		20
(3)
A 		14
(0.2)
A 		7.1
(-3)
A 		8.7
(-2.3)
A 		13.3
(-0.1)
M 		13
avr 12.6
(1) 		14.6
(3) 		9.7
(-1.9) 		8.6
(-3) 		10.1
(-1.5) 		10
(-1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13999
Sequence Type Exemplar sequence
Representative Public ID F10A3.9 NCBI
Target Description F10A3.9 /REP_DB=WormBase Gene ID /WP=CE15775 /TR=O45338 /GB=CAB07343.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074666 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-254) (str-254) mRNA, complete cds. 11/11 None
SNAP00000000095 ENSEMBL cdna:SNAP chromosome:CEL140:V:16154561:16156058:-1 11/11 None
GENEFINDER00000000109 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16154561:16156159:-1 11/11 None
F10A3.9 ENSEMBL cdna:known chromosome:CEL140:V:16154703:16156058:-1 gene:F10A3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16154702-16156058(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-254
Ensembl F10A3.9
Entrez Gene 184279 Entrez gene
SwissProt O45338 EMBL-EBI
WormBase CE15775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07343 Hypothetical protein F10A3.9 [Caenorhabditis elegans] ref|NP_507067.1| Seven TM Receptor family member (str-254) [Caenorhabditis elegans] 1.0E-179
blast CAB07343 Hypothetical protein F10A3.9 [Caenorhabditis elegans] ref|NP_507067.1| Seven TM Receptor family member (str-254) [Caenorhabditis elegans] 1.0E-177
blast AAG24108 Seven tm receptor protein 253 [Caenorhabditis elegans] ref|NP_503619.1| Seven TM Receptor family member (str-253) [Caenorhabditis elegans] 1.0E-137
blast T32039 hypothetical protein F41B5.8 - Caenorhabditis elegans 1.0E-131
blast AAG24108 Seven tm receptor protein 253 [Caenorhabditis elegans] ref|NP_503619.1| Seven TM Receptor family member (str-253) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.2E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507067.1 7 15-37,44-66,96-118,138-160,210-232,267-286,296-318
F10A3.9 7 15-37,44-66,96-118,138-160,210-232,267-286,296-318
SNAP00000000095 6 15-37,44-66,96-118,138-160,210-232,262-284
GENEFINDER00000000109 6 32-54,61-83,113-135,155-177,227-249,279-301
Sequence
Target Sequence 
>C. ELEGANS:178440_AT
agcagcaatgactggctcgacacgttccaagactggaagctcatcctttggctgttgttc
cccattgctaacggtggagtttggtgttttgcagccgctgttatttttgctggaaaagag
gactcggatcgatttttaagagaattttatttaccattggttcagaataagacaagtttt
gaagatgtttactatggaggtccgttttattacttgaatgatgcgcatggaaactcttat
atcaactggatatcgtttcaaggtactttggtggttttgtcgcttatcatcatatcattt
ataacaatgatttattttggtgtgaaaggctacaattcgatgaaagacctaatgagacac
gcttccatctccgacaaggccaaaagtcttcagtctcagcttttcaaagcactagtgtta
caaaccataattccagtatttctaatgcacattcctgcaaccgcaattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGCAATGACTGGCTCGACACGT 230 77 385 Antisense
GGCTCGACACGTTCCAAGACTGGAA 541 535 398 Antisense
GAAGCTCATCCTTTGGCTGTTGTTC 132 343 420 Antisense
TTGTTCCCCATTGCTAACGGTGGAG 43 671 439 Antisense
TGGAGTTTGGTGTTTTGCAGCCGCT 180 549 459 Antisense
TGCAGCCGCTGTTATTTTTGCTGGA 691 577 474 Antisense
TGGTGGTTTTGTCGCTTATCATCAT 534 553 653 Antisense
AGACCTAATGAGACACGCTTCCATC 227 71 729 Antisense
TTCCATCTCCGACAAGGCCAAAAGT 705 695 747 Antisense
GGCCAAAAGTCTTCAGTCTCAGCTT 315 543 762 Antisense
TGCACATTCCTGCAACCGCAATTTA 257 577 830 Antisense
Sequence Source Affymetrix Proprietary Database