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[178439_s_at]

Description F17C8.3 /REP_DB=WormBase Gene ID /WP=CE00957 /TR=Q19527 /GB=CAA84799.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 2.9
(-3)
A 		6.3
(-2.7)
A 		2.8
(-3)
A 		75.4
(3)
P 		73
B 17.8
(2.1)
A 		20
(3)
A 		6
(-3)
A 		13.2
(0.1)
A 		14
C 20.6
(-2.3)
A 		14.8
(-2.6)
A 		8.6
(-3)
A 		105
(3)
P 		96
avr 13.8
(-2.2) 		13.7
(-2.2) 		5.8
(-3) 		64.5
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 791
1 2 3 4 5 6 range
A 9.2
(-3)
A 		11
(-3)
A 		25.1
(-2.9)
A 		69.6
(-2.5)
A 		236.2
(-1.3)
P 		792.3
(3)
P 		783
B 26.9
(-3)
A 		22.2
(-3)
A 		32.9
(-2.9)
A 		53.8
(-2.7)
P 		459.4
(1.2)
P 		640.8
(3)
P 		619
C 1.5
(-3)
A 		3.8
(-3)
A 		4.8
(-3)
A 		77.7
(-2.1)
A 		373
(1.2)
P 		527.4
(3)
P 		526
avr 12.5
(-3) 		12.3
(-3) 		20.9
(-2.9) 		67
(-2.5) 		356.2
(0.2) 		653.5
(3) 		641
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1
(-2.8)
A 		1.4
(-2.6)
A 		0.7
(-3)
A 		11
(3)
P 		10
B 5.7
(3)
A 		4.9
(1.9)
A 		1.4
(-3)
A 		2.8
(-1)
A 		4
C 6.8
(-1.4)
A 		4.3
(-2.5)
A 		3
(-3)
A 		17.7
(3)
P 		15
avr 4.5
(-1.1) 		3.5
(-1.8) 		1.7
(-3) 		10.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 1.7
(-3)
A 		3.9
(-2.9)
A 		5.5
(-2.9)
A 		17.6
(-2.5)
A 		71.3
(-0.8)
P 		192.9
(3)
P 		191
B 9.3
(-3)
A 		7.4
(-3)
A 		8
(-3)
A 		14.2
(-2.8)
P 		186.6
(1.6)
P 		239
(3)
P 		232
C 0.6
(-3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		15.6
(-2.5)
A 		120.7
(1.1)
P 		176.6
(3)
P 		176
avr 3.9
(-3) 		4.2
(-3) 		4.9
(-3) 		15.8
(-2.6) 		126.2
(0.7) 		202.8
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178439_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7813
Sequence Type Exemplar sequence
Representative Public ID F17C8.3 NCBI
Target Description F17C8.3 /REP_DB=WormBase Gene ID /WP=CE00957 /TR=Q19527 /GB=CAA84799.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065488(11), NM_065549(11), NM_001027372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065488 NCBI Caenorhabditis elegans R07E5.15 (R07E5.15) mRNA, complete cds. 11/11 A 
NM_065549 NCBI Caenorhabditis elegans T23F11.2 (T23F11.2) mRNA, complete cds. 11/11 A 
NM_001027372 NCBI Caenorhabditis elegans F17C8.7 (F17C8.7) mRNA, complete cds. 11/11 None
SNAP00000012145 ENSEMBL cdna:SNAP chromosome:CEL140:III:4736032:4737167:1 11/11 None
GENEFINDER00000012157 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4736032:4737167:1 11/11 None
SNAP00000039543 ENSEMBL cdna:SNAP chromosome:CEL140:III:4654319:4655752:-1 11/11 None
GENEFINDER00000039551 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4654319:4655752:-1 11/11 None
GENEFINDER00000012860 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4398823:4402409:1 11/11 None
SNAP00000012847 ENSEMBL cdna:SNAP chromosome:CEL140:III:4398850:4402409:1 11/11 None
R07E5.15 ENSEMBL cdna:known chromosome:CEL140:III:4401427:4402419:1 gene:R07E5.15 11/11 A 
T23F11.2 ENSEMBL cdna:known chromosome:CEL140:III:4654308:4655431:-1 gene:T23F11.2 11/11 A 
F17C8.7 ENSEMBL cdna:known chromosome:CEL140:III:4736032:4737168:1 gene:F17C8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4731905-4737167(+) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl R07E5.15
T23F11.2
F17C8.7
Entrez Gene 175570 Entrez gene
175611 Entrez gene
175624 Entrez gene
SwissProt Q7YTH0 EMBL-EBI
O62342 EMBL-EBI
Q22694 EMBL-EBI
WormBase CE35180 Wormbase
CE18126 Wormbase
CE01095 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-158
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-139
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-132
blast CAA86457 Hypothetical protein T23F11.2 [Caenorhabditis elegans] ref|NP_497950.1| T23F11.2 [Caenorhabditis elegans] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:178439_S_AT
catccagttccgtgtgaactcatcaaagctttcccaatgggacaagatgaatctttcgat
caaaggatacgtgttgccgatctatgcgaagagtttgaagcagttcattgatcagaagaa
aactgcaggaaataaggagcaagagacattctccttgtccgtcaagttcacggatcagtt
ctcggctccgcagacagtcatcaacttgccaggatgtgccacgtgtatcgagtcgactga
tcatccggttgacgtggaagaattggacactacaactgcagtcaacatcgaaagagatgt
ctccactgctgttccaattggttcaatgatgggatttgttgaggagtacaaacgtcgtca
attgaacaaaggatgctggttgtccaactacatctgtggaactgagaagcaaccggagaa
acagtcaatgagatcttctcgtagatcaagccgttcgtcgaatcattctgcaaagagctc
aaaggcttgccgtattcaggctaataaaaagaacaaaagtgatgtcaatgtgtgccttga
agc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCAGTTCCGTGTGAACTCATCA 276 211 2358 Antisense
AGTTCCGTGTGAACTCATCAAAGCT 1 65 2363 Antisense
TACGTGTTGCCGATCTATGCGAAGA 371 647 2425 Antisense
CAAGTTCACGGATCAGTTCTCGGCT 342 185 2520 Antisense
CCGGTTGACGTGGAAGAATTGGACA 576 263 2602 Antisense
GAATTGGACACTACAACTGCAGTCA 231 323 2617 Antisense
GGACACTACAACTGCAGTCAACATC 96 525 2622 Antisense
ACAACTGCAGTCAACATCGAAAGAG 454 111 2629 Antisense
ATCGAAAGAGATGTCTCCACTGCTG 171 37 2644 Antisense
AATTGGTTCAATGATGGGATTTGTT 511 177 2673 Antisense
GTGATGTCAATGTGTGCCTTGAAGC 88 483 2876 Antisense
Sequence Source Affymetrix Proprietary Database