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[178438_s_at]

Description R119.7 /REP_DB=WormBase Gene ID /WP=CE18161 /TR=O61711 /GB=AAC16433.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 62      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 20.1
(-3)
A 		39.2
(-1.6)
A 		100.8
(3)
A 		23.2
(-2.8)
A 		81
B 97.7
(3)
A 		68.9
(0.8)
A 		66.9
(0.6)
A 		19.2
(-3)
A 		79
C 97.5
(1.7)
A 		54.3
(-3)
A 		69.9
(-1.3)
A 		109.6
(3)
A 		55
avr 71.8
(1.4) 		54.1
(-2.3) 		79.2
(3) 		50.7
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 97.2
(-1.7)
A 		22.4
(-3)
A 		83.9
(-1.9)
A 		129.9
(-1.1)
A 		301.8
(2)
P 		357.6
(3)
P 		335
B 45.4
(-2.5)
A 		17.7
(-3)
A 		78.4
(-1.8)
A 		189.2
(0.4)
A 		268.8
(2)
P 		320.5
(3)
P 		303
C 84
(-1.3)
A 		83.9
(-1.3)
A 		23.8
(-3)
A 		135.9
(0.1)
A 		236.5
(2.9)
P 		240.7
(3)
P 		217
avr 75.5
(-2.2) 		41.3
(-3) 		62
(-2.5) 		151.7
(-0.5) 		269
(2.2) 		306.3
(3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 7.3
(-2)
A 		8.5
(-1.7)
A 		26.3
(3)
A 		3.4
(-3)
A 		23
B 31.2
(3)
A 		17
(-0.1)
A 		15.5
(-0.5)
A 		4.1
(-3)
A 		27
C 32.3
(3)
A 		15.6
(-3)
A 		24.3
(0.1)
A 		18.5
(-2)
A 		17
avr 23.6
(3) 		13.7
(-1) 		22
(2.4) 		8.7
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 17.9
(-2.3)
A 		8
(-3)
A 		18.3
(-2.3)
A 		33
(-1.2)
A 		91.1
(3)
P 		87.1
(2.7)
P 		83
B 15.8
(-2.5)
A 		5.9
(-3)
A 		19
(-2.3)
A 		50.1
(-0.7)
A 		109.2
(2.5)
P 		119.5
(3)
P 		114
C 31.1
(-1)
A 		25.6
(-1.4)
A 		6.1
(-3)
A 		27.3
(-1.3)
A 		76.5
(2.7)
P 		80.6
(3)
P 		75
avr 21.6
(-2.4) 		13.2
(-3) 		14.5
(-2.9) 		36.8
(-1.3) 		92.3
(2.8) 		95.7
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178438_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2571
Sequence Type Exemplar sequence
Representative Public ID R119.7 NCBI
Target Description R119.7 /REP_DB=WormBase Gene ID /WP=CE18161 /TR=O61711 /GB=AAC16433.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058323 NCBI Caenorhabditis elegans R119.7 (R119.7) mRNA, complete cds. 11/11 None
SNAP00000007611 ENSEMBL cdna:SNAP chromosome:CEL140:I:364522:367943:1 11/11 None
GENEFINDER00000007618 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:364522:367943:1 11/11 None
R119.7 ENSEMBL cdna:known chromosome:CEL140:I:364522:368511:1 gene:R119.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:364521-367943(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R119.7
Entrez Gene 171627 Entrez gene
SwissProt O61711 EMBL-EBI
WormBase CE18161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16433 Hypothetical protein R119.7 [Caenorhabditis elegans] ref|NP_490724.1| R119.7 [Caenorhabditis elegans] 0.0
blast CAE74203 Hypothetical protein CBG21881 [Caenorhabditis briggsae] 1.0E-145
blast CAE74203 Hypothetical protein CBG21881 [Caenorhabditis briggsae] 1.0E-144
blast CAE61279 Hypothetical protein CBG05098 [Caenorhabditis briggsae] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 9.5E-5
Sequence
Target Sequence 
>C. ELEGANS:178438_S_AT
aaatctccgaatcaatccaaccaacatcgatcatcatgacgaaccggcaccatggtctcc
gctgaaacgtcttcgcgccgaaagtggatccctatcaactgcacaagtcgcgtcgcccga
gttctcaccgatcaaaccaaagacaatggagttccacgagactgaggatgatgtttttga
aactggaccaccaccaacctacttatccgaaggaaacgaaaacgcggagaagaaatgtgt
tgagcagccgaaaatcaactacgacgacattaataatagtcgtcttccgtcgaattctca
ttcggcagcaccgaattccgagaagaagcatttcgtttttccggaatacccaatgtgccg
tcactcgtcagttccatcgattgctcacttggtcggtgatctgtcggacttttgcccaca
cgctacagccgacgagaagatgctgctcgacgaggcgtcttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTCCGAATCAATCCAACCAAC 401 117 1227 Antisense
TCATGACGAACCGGCACCATGGTCT 66 621 1260 Antisense
CGTCTTCGCGCCGAAAGTGGATCCC 54 247 1294 Antisense
CCCTATCAACTGCACAAGTCGCGTC 633 259 1316 Antisense
GTCTTCCGTCGAATTCTCATTCGGC 217 467 1508 Antisense
CGGAATACCCAATGTGCCGTCACTC 444 241 1568 Antisense
TCACTCGTCAGTTCCATCGATTGCT 252 627 1587 Antisense
CCATCGATTGCTCACTTGGTCGGTG 357 271 1600 Antisense
GTCGGTGATCTGTCGGACTTTTGCC 221 473 1618 Antisense
CCACACGCTACAGCCGACGAGAAGA 459 275 1642 Antisense
TGCTGCTCGACGAGGCGTCTTCAAT 192 581 1667 Antisense
Sequence Source Affymetrix Proprietary Database