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[178437_at]

Description F08H9.9 /REP_DB=WormBase Gene ID /WP=CE19781 /TR=Q9XTF9 /GB=CAB01438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 38      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 17.2
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		15.9
(2.5)
A 		16
B 36.3
(3)
A 		24.1
(0.8)
A 		2.6
(-3)
A 		2.9
(-2.9)
A 		34
C 40.9
(3)
A 		19.4
(-2.8)
A 		18.8
(-3)
A 		28.8
(-0.3)
A 		22
avr 31.5
(3) 		14.8
(-1.2) 		7.4
(-3) 		15.9
(-0.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 65.3
(-0.8)
P 		63.1
(-0.9)
P 		174.2
(3)
P 		98.7
(0.4)
P 		55.7
(-1.1)
A 		2.4
(-3)
A 		172
B 81.5
(0.4)
P 		58.1
(-0.9)
P 		130
(3)
P 		59.3
(-0.8)
P 		48.1
(-1.5)
P 		19.8
(-3)
A 		110
C 52.5
(-1.7)
A 		91.7
(-0)
P 		165.3
(3)
P 		71.2
(-0.9)
M 		57.3
(-1.5)
A 		20.5
(-3)
A 		145
avr 66.4
(-0.8) 		71
(-0.6) 		156.5
(3) 		76.4
(-0.4) 		53.7
(-1.3) 		14.2
(-3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.3
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		2.3
(-0.9)
A 		6
B 11.6
(3)
A 		6
(-0.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		11
C 13.5
(3)
A 		5.6
(-2.5)
A 		6.5
(-1.9)
A 		4.9
(-3)
A 		9
avr 10.5
(3) 		3.9
(-1.9) 		2.4
(-3) 		2.6
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12
(-1.2)
P 		22.4
(0.5)
P 		37.9
(3)
P 		25
(0.9)
P 		16.8
(-0.4)
A 		0.6
(-3)
A 		37
B 28.4
(2.2)
P 		19.3
(-0)
P 		31.6
(3)
P 		15.7
(-0.9)
P 		19.6
(0)
P 		7.4
(-3)
A 		24
C 19.5
(-0.8)
A 		28
(0.6)
P 		42.1
(3)
P 		14.3
(-1.7)
M 		18.5
(-1)
A 		6.8
(-3)
A 		35
avr 20
(-0.2) 		23.2
(0.4) 		37.2
(3) 		18.3
(-0.5) 		18.3
(-0.5) 		4.9
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14220
Sequence Type Exemplar sequence
Representative Public ID F08H9.9 NCBI
Target Description F08H9.9 /REP_DB=WormBase Gene ID /WP=CE19781 /TR=Q9XTF9 /GB=CAB01438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074190 NCBI Caenorhabditis elegans C-type LECtin family member (clec-55) (clec-55) mRNA, complete cds. 11/11 A 
SNAP00000007911 ENSEMBL cdna:SNAP chromosome:CEL140:V:14482392:14484784:1 11/11 None
F08H9.9 ENSEMBL cdna:known chromosome:CEL140:V:14481873:14484784:1 gene:F08H9.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14481872-14484784(+) 99.56 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-55
Ensembl F08H9.9
Entrez Gene 184218 Entrez gene
SwissProt Q9XTF9 EMBL-EBI
WormBase CE19781 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01438 Hypothetical protein F08H9.9 [Caenorhabditis elegans] emb|CAB01152.1| Hypothetical protein F08H9.9 [Caenorhabditis elegans] ref|NP_506591.1| C-type LECtin family member (clec-55) [Caenorhabditis elegans] 0.0
blast CAB01145 Hypothetical protein F08H9.8 [Caenorhabditis elegans] ref|NP_506590.2| C-type LECtin family member (clec-54) [Caenorhabditis elegans] 0.0
blast CAB01438 Hypothetical protein F08H9.9 [Caenorhabditis elegans] emb|CAB01152.1| Hypothetical protein F08H9.9 [Caenorhabditis elegans] ref|NP_506591.1| C-type LECtin family member (clec-55) [Caenorhabditis elegans] 1.0E-139
blast CAE60888 Hypothetical protein CBG04603 [Caenorhabditis briggsae] 1.0E-131
blast CAB01145 Hypothetical protein F08H9.8 [Caenorhabditis elegans] ref|NP_506590.2| C-type LECtin family member (clec-54) [Caenorhabditis elegans] 1.0E-113
blast T23853 hypothetical protein R02D5.2 - Caenorhabditis elegans 4.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 9.7E-6
Pfam IPR000859 EMBL-EBI CUB 2.8E-21
Pfam IPR000859 EMBL-EBI CUB 6.2E-15
Pfam IPR000859 EMBL-EBI CUB 2.8E-21
Pfam IPR000859 EMBL-EBI CUB 6.2E-15
Sequence
Target Sequence 
>C. ELEGANS:178437_AT
taacttggactgcttctatagcataacttctccaaacaatacttacatcactcttcaatt
agacccatatctggtggaaaatgctattgactacttgacaatttatgacggaccaaatgc
aacctacaaaagtttgggaaaggcaacttcatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTTGGACTGCTTCTATAGCATA 265 637 558 Antisense
GCTTCTATAGCATAACTTCTCCAAA 457 305 569 Antisense
AGCATAACTTCTCCAAACAATACTT 228 79 577 Antisense
AACAATACTTACATCACTCTTCAAT 127 135 592 Antisense
ACATCACTCTTCAATTAGACCCATA 434 105 602 Antisense
CACTCTTCAATTAGACCCATATCTG 444 197 606 Antisense
AGACCCATATCTGGTGGAAAATGCT 702 69 618 Antisense
GGAAAATGCTATTGACTACTTGACA 593 527 633 Antisense
ACTACTTGACAATTTATGACGGACC 707 99 647 Antisense
GGACCAAATGCAACCTACAAAAGTT 611 521 667 Antisense
AGTTTGGGAAAGGCAACTTCATCTT 516 61 688 Antisense
Sequence Source Affymetrix Proprietary Database