[Home] | [Total List]

[178435_at]

Description C17H1.7 /REP_DB=WormBase Gene ID /WP=CE15629 /TR=O45258 /GB=CAB07171.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      6grp_highest_nonorm > 63      6grp_total > 71      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 8
(-3)
A 		16.7
(-2.1)
A 		57.4
(1.9)
P 		68.7
(3)
P 		61
B 7.7
(-3)
A 		30.4
(-1.7)
A 		66.7
(0.5)
P 		109.9
(3)
P 		102
C 28
(-3)
A 		44.9
(-2)
A 		109.2
(1.9)
P 		126.9
(3)
P 		99
avr 14.6
(-3) 		30.7
(-1.9) 		77.8
(1.3) 		101.8
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1277
1 2 3 4 5 6 range
A 96.5
(-3)
P 		209.6
(-2.3)
P 		584.4
(-0.1)
P 		1113.9
(3)
P 		755.8
(0.9)
P 		339.2
(-1.6)
P 		1017
B 154.8
(-3)
P 		208.1
(-2.7)
P 		649.3
(0.2)
P 		1071.9
(3)
P 		661.5
(0.3)
P 		456.6
(-1)
P 		917
C 100.7
(-3)
P 		281.9
(-2.1)
P 		532.7
(-1)
P 		1373.7
(3)
P 		661.5
(-0.4)
P 		470.2
(-1.3)
P 		1273
avr 117.3
(-3) 		233.2
(-2.3) 		588.8
(-0.4) 		1186.5
(3) 		692.9
(0.2) 		422
(-1.3) 		1069
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.9
(-3)
A 		3.6
(-2.7)
A 		15
(3)
P 		10.1
(0.6)
P 		12
B 2.4
(-3)
A 		7.5
(-1.5)
A 		15.5
(0.7)
P 		23.4
(3)
P 		21
C 9.3
(-3)
A 		12.9
(-2.3)
A 		38.1
(3)
P 		21.4
(-0.5)
P 		29
avr 4.9
(-3) 		8
(-2) 		22.9
(3) 		18.3
(1.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 17.8
(-3)
P 		74.6
(-1.7)
P 		127.3
(-0.5)
P 		282.5
(3)
P 		228.1
(1.8)
P 		82.6
(-1.5)
P 		265
B 53.9
(-3)
P 		69.3
(-2.6)
P 		157.7
(-0.3)
P 		283.9
(3)
P 		268.7
(2.6)
P 		170.3
(0)
P 		230
C 37.3
(-3)
P 		86
(-1.8)
P 		135.6
(-0.5)
P 		276.3
(3)
P 		214
(1.4)
P 		157.4
(0)
P 		239
avr 36.3
(-3) 		76.6
(-2) 		140.2
(-0.5) 		280.9
(3) 		236.9
(1.9) 		136.8
(-0.5) 		245
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1134
Sequence Type Exemplar sequence
Representative Public ID C17H1.7 NCBI
Target Description C17H1.7 /REP_DB=WormBase Gene ID /WP=CE15629 /TR=O45258 /GB=CAB07171.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060900 NCBI Caenorhabditis elegans C17H1.7 (C17H1.7) mRNA, complete cds. 11/11 None
SNAP00000005620 ENSEMBL cdna:SNAP chromosome:CEL140:I:13144706:13146641:-1 10/11 None
GENEFINDER00000005624 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13144706:13146641:-1 11/11 None
C17H1.7 ENSEMBL cdna:known chromosome:CEL140:I:13144706:13146641:-1 gene:C17H1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13144636-13146572(-) 96.83 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.7
Entrez Gene 182749 Entrez gene
SwissProt O45258 EMBL-EBI
WormBase CE15629 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07171 Hypothetical protein C17H1.7 [Caenorhabditis elegans] ref|NP_493301.1| C17H1.7 [Caenorhabditis elegans] 0.0
blast CAB07170 Hypothetical protein C17H1.6 [Caenorhabditis elegans] ref|NP_493300.1| C17H1.6 [Caenorhabditis elegans] 2.0E-77
blast CAB07168 Hypothetical protein C17H1.4 [Caenorhabditis elegans] ref|NP_493296.1| C17H1.4 [Caenorhabditis elegans] 1.0E-75
Sequence
Target Sequence 
>C. ELEGANS:178435_AT
gatacacgttggtcaggcacaggagaaagacagaaaagagacgaatttcattgctgctgt
caacagaatgattcaagctggacgagatcttccagaaaccgttgattctttggaaggtca
tacattaaagcttagatatggaagtgatgcatcggctttggaaagcgacattgggctttg
tgagatcattgtttccagtattaaccgcaaaatatcgaaactacaagacagttgcataga
tctttccaactatgccatcgcagatcatagaatggttcaagaaatgcaaaaaaacgctct
aggaatcaatgagtctgttcggaggattcaaagtcatttaacacaattccgagtttcgtt
gtcggacaatccaattaccaattcgatggaactgtacaaaaaagttcaaaccgaaagtca
cagcttgagtacgaagattaactcgatgccagttgtcactgaaaccaaccatgcggtggc
gtatttgagaaaacaaagagaaacactagctctgaatcttcctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACACGTTGGTCAGGCACAGGAG 188 423 675 Antisense
AAGAGACGAATTTCATTGCTGCTGT 650 153 710 Antisense
GGAAGTGATGCATCGGCTTTGGAAA 334 531 814 Antisense
GCGACATTGGGCTTTGTGAGATCAT 532 289 839 Antisense
CATTGTTTCCAGTATTAACCGCAAA 614 215 861 Antisense
TAGATCTTTCCAACTATGCCATCGC 683 651 911 Antisense
AACACAATTCCGAGTTTCGTTGTCG 463 127 1014 Antisense
GTCGGACAATCCAATTACCAATTCG 508 471 1035 Antisense
TTAACTCGATGCCAGTTGTCACTGA 238 685 1112 Antisense
GAAACCAACCATGCGGTGGCGTATT 579 355 1135 Antisense
AACACTAGCTCTGAATCTTCCTACT 371 135 1176 Antisense
Sequence Source Affymetrix Proprietary Database