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[178434_at]

Description F57G4.1 /REP_DB=WormBase Gene ID /WP=CE18766 /TR=Q9XUX6 /GB=CAB04506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 33.3
(3)
A 		9.2
(-3)
A 		15.7
(-1.4)
A 		22.1
(0.2)
A 		24
B 2.1
(-3)
A 		7.4
(0.2)
A 		6.2
(-0.5)
A 		12.1
(3)
A 		10
C 5.3
(-3)
A 		26.1
(3)
A 		10
(-1.6)
A 		20.6
(1.4)
A 		21
avr 13.6
(-0.7) 		14.2
(-0.2) 		10.6
(-3) 		18.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 35.3
(3)
A 		25.6
(1.1)
A 		5.2
(-3)
A 		22.6
(0.5)
A 		20.2
(-0)
A 		16.1
(-0.8)
A 		30
B 14.6
(-1.2)
A 		11.3
(-2)
A 		32.1
(3)
A 		24.5
(1.2)
A 		17.5
(-0.5)
A 		6.9
(-3)
A 		25
C 7.1
(-2)
A 		13.9
(0)
A 		3.6
(-3)
A 		23.8
(3)
A 		23.9
(3)
A 		10.2
(-1)
A 		20
avr 19
(0.8) 		16.9
(-0.2) 		13.6
(-1.8) 		23.6
(3) 		20.5
(1.5) 		11.1
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.1
(3)
A 		2
(-3)
A 		4.1
(-1.8)
A 		3.2
(-2.3)
A 		10
B 0.7
(-3)
A 		1.8
(0.5)
A 		1.4
(-0.8)
A 		2.6
(3)
A 		2
C 1.7
(-3)
A 		7.5
(3)
A 		3.5
(-1.1)
A 		3.5
(-1.1)
A 		6
avr 4.8
(3) 		3.8
(-0.3) 		3
(-3) 		3.1
(-2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.5
(1.1)
A 		9.1
(3)
A 		1.1
(-3)
A 		5.7
(0.5)
A 		6.1
(0.8)
A 		3.9
(-0.9)
A 		8
B 5.1
(-0.1)
A 		3.8
(-1.6)
A 		7.8
(3)
A 		6.5
(1.5)
A 		7.1
(2.2)
A 		2.6
(-3)
A 		5
C 2.6
(-1.5)
A 		4.2
(-0.1)
A 		0.9
(-3)
A 		4.8
(0.4)
A 		7.7
(3)
A 		3.4
(-0.8)
A 		7
avr 4.7
(-0.7) 		5.7
(0.9) 		3.3
(-3) 		5.7
(0.9) 		7
(3) 		3.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12830
Sequence Type Exemplar sequence
Representative Public ID F57G4.1 NCBI
Target Description F57G4.1 /REP_DB=WormBase Gene ID /WP=CE18766 /TR=Q9XUX6 /GB=CAB04506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075056 NCBI Caenorhabditis elegans F57G4.1 (F57G4.1) mRNA, complete cds. 11/11 None
SNAP00000009853 ENSEMBL cdna:SNAP chromosome:CEL140:V:17627782:17630174:1 11/11 None
F57G4.1 ENSEMBL cdna:known chromosome:CEL140:V:17626106:17630174:1 gene:F57G4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009870 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17626105-17630174(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57G4.1
Entrez Gene 186456 Entrez gene
SwissProt Q9XUX6 EMBL-EBI
WormBase CE18766 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 0.0
blast CAI79258 Hypothetical protein Y6G8.5 [Caenorhabditis elegans] ref|NP_001024284.1| Y6G8.5 [Caenorhabditis elegans] 5.0E-88
blast CAI79258 Hypothetical protein Y6G8.5 [Caenorhabditis elegans] ref|NP_001024284.1| Y6G8.5 [Caenorhabditis elegans] 9.0E-88
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 2.0E-68
blast CAD54151 Hypothetical protein R10E8.8 [Caenorhabditis elegans] ref|NP_872158.1| R10E8.8 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.3E-15
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.3E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507457.1 1 82-104
F57G4.1 1 82-104
Sequence
Target Sequence 
>C. ELEGANS:178434_AT
aagttttatcttgctttgatgctaataaactgcagaatctgaaattcgaatcaaacgatt
gtcagctagatctcaggaaaatcacttcactactacaatggaaacatgcacgtggtgtat
ttatcaagaagtgtgctgtttctatgtcaatgcgagatttttctcatttctcaaatgtgg
atgtgcacttagaattcggttcagtggaggatatactgttcttgaaaaagaaattccttg
aaagcaatacaagacaaatctataaattcacatgcgatagtttccccgtagcaagattgc
tcgatgaatttggtgcaccatgtgtagtgagcaagacaaagatatcggaagatcagaaat
ggattttcaatactcccgacacactgaagactgtcttgatattaagcgcccgatctgttt
ttggaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTTATCTTGCTTTGATGCTAA 406 157 2051 Antisense
AACGATTGTCAGCTAGATCTCAGGA 109 143 2104 Antisense
GAAAATCACTTCACTACTACAATGG 614 353 2127 Antisense
GGATGTGCACTTAGAATTCGGTTCA 118 515 2229 Antisense
ATTCACATGCGATAGTTTCCCCGTA 573 9 2316 Antisense
ATAGTTTCCCCGTAGCAAGATTGCT 18 21 2327 Antisense
TGCTCGATGAATTTGGTGCACCATG 287 581 2348 Antisense
ATGGATTTTCAATACTCCCGACACA 420 49 2409 Antisense
ACTCCCGACACACTGAAGACTGTCT 561 99 2422 Antisense
GACTGTCTTGATATTAAGCGCCCGA 418 375 2439 Antisense
AAGCGCCCGATCTGTTTTTGGAAAG 303 145 2454 Antisense
Sequence Source Affymetrix Proprietary Database