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[178433_at]

Description C01G6.9 /REP_DB=WormBase Gene ID /WP=CE00871 /TR=Q17575 /GB=CAA84638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 7.8
(-3)
A 		56.2
(3)
A 		29.1
(-0.4)
A 		15.5
(-2)
A 		48
B 9.3
(-3)
A 		56.8
(1.4)
A 		74.1
(3)
A 		40.4
(-0.1)
A 		65
C 5.1
(-3)
A 		57
(0.6)
A 		66.2
(1.3)
P 		90.6
(3)
A 		86
avr 7.4
(-3) 		56.7
(3) 		56.5
(3) 		48.8
(2) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 60
(-0.6)
P 		27.4
(-3)
A 		30.6
(-2.8)
A 		68.1
(-0)
A 		109.7
(3)
P 		59.9
(-0.6)
A 		82
B 49.9
(-0.7)
A 		52.9
(0.4)
A 		60
(3)
A 		47.5
(-1.5)
A 		51.6
(-0)
A 		43.4
(-3)
P 		17
C 44.7
(-0.2)
P 		53
(0.5)
A 		13.1
(-3)
A 		80.6
(3)
A 		65.1
(1.6)
M 		59.3
(1.1)
A 		68
avr 51.5
(-0.5) 		44.4
(-1.6) 		34.6
(-3) 		65.4
(1.5) 		75.5
(3) 		54.2
(-0.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.8
(-2.7)
A 		12.2
(3)
A 		7.6
(0.2)
A 		2.3
(-3)
A 		10
B 3
(-3)
A 		14
(1.6)
A 		17.2
(3)
A 		8.6
(-0.6)
A 		14
C 1.7
(-3)
A 		16.4
(1.1)
A 		23.1
(3)
P 		15.3
(0.8)
A 		21
avr 2.5
(-3) 		14.2
(2.2) 		16
(3) 		8.7
(-0.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.1
(-2)
P 		9.7
(-2.3)
A 		6.7
(-3)
A 		17.3
(-0.6)
A 		33.1
(3)
P 		14.6
(-1.2)
A 		26
B 17.4
(0.4)
A 		17.6
(0.6)
A 		14.6
(-1.6)
A 		12.6
(-3)
A 		21
(3)
A 		16.2
(-0.4)
P 		8
C 16.6
(1.5)
P 		16.2
(1.3)
A 		3.3
(-3)
A 		16.2
(1.3)
A 		21.1
(3)
M 		19.9
(2.6)
A 		18
avr 15
(-0.6) 		14.5
(-0.8) 		8.2
(-3) 		15.4
(-0.4) 		25.1
(3) 		16.9
(0.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3094
Sequence Type Exemplar sequence
Representative Public ID C01G6.9 NCBI
Target Description C01G6.9 /REP_DB=WormBase Gene ID /WP=CE00871 /TR=Q17575 /GB=CAA84638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063579 NCBI Caenorhabditis elegans C01G6.9 (C01G6.9) mRNA, complete cds. 11/11 None
SNAP00000013222 ENSEMBL cdna:SNAP chromosome:CEL140:II:9294016:9295479:-1 11/11 None
GENEFINDER00000013247 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9294016:9295664:-1 11/11 None
C01G6.9 ENSEMBL cdna:known chromosome:CEL140:II:9294016:9295664:-1 gene:C01G6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9294012-9295661(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G6.9
Entrez Gene 182078 Entrez gene
SwissProt Q17575 EMBL-EBI
WormBase CE00871 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84638 Hypothetical protein C01G6.9 [Caenorhabditis elegans] ref|NP_495980.1| C01G6.9 [Caenorhabditis elegans] 0.0
blast CAE57849 Hypothetical protein CBG00884 [Caenorhabditis briggsae] 1.0E-161
blast CAE57849 Hypothetical protein CBG00884 [Caenorhabditis briggsae] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:178433_AT
aatccgtcctcacaaaccagaagattcgaattcaccgaaaaagcaaagaaaaattaaaat
catagaatctccaccattctccctatgtctgaaatatcttcaatgccaaaaagatgctca
tcagatgcgagttaattgctcaaaaacttcaaatgcccactccatcgacggcctggattc
agatgatctgtcaagttcaacgtggcaaaattgtaaaagctcgttggaagaagactttta
tttgatgaaccaacgaagagaagaagcttttgcatatttggataaatgtgtaccgattgc
aaatgttactcgtgaatttatgataactgatcgagtttgtagagcaagtacactaaaaga
taagaagccaagaaaagatcttttgaactgtcattttgaagtttcaagaaaacgaaaaga
gtgtgccctgctaagagattgttgtgttcaggcggatgtatgtgaacggagtgctctata
tgcggtgatttccgacgaatatttgctcagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGTCCTCACAAACCAGAAGAT 79 163 534 Antisense
AATCATAGAATCTCCACCATTCTCC 269 171 591 Antisense
CACCATTCTCCCTATGTCTGAAATA 109 203 605 Antisense
CAAAAACTTCAAATGCCCACTCCAT 459 191 674 Antisense
CTCCATCGACGGCCTGGATTCAGAT 9 237 693 Antisense
GATGATCTGTCAAGTTCAACGTGGC 267 411 715 Antisense
GAGTGTGCCCTGCTAAGAGATTGTT 260 401 952 Antisense
GAGATTGTTGTGTTCAGGCGGATGT 368 397 968 Antisense
GGATGTATGTGAACGGAGTGCTCTA 385 513 987 Antisense
GAGTGCTCTATATGCGGTGATTTCC 302 401 1002 Antisense
TTCCGACGAATATTTGCTCAGACGA 481 699 1023 Antisense
Sequence Source Affymetrix Proprietary Database