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[178432_s_at]

Description ZC443.3 /REP_DB=WormBase Gene ID /WP=CE06587 /TR=Q23321 /GB=CAA99948.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 55      6grp_total > 83      4grp_total > 03      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3457
1 2 3 4 range
A 1093.1
(-1.5)
P 		616.7
(-2.5)
P 		380.1
(-3)
P 		3149
(3)
P 		2769
B 1040.5
(-1.8)
P 		828.8
(-2.2)
P 		379.3
(-3)
P 		3661.6
(3)
P 		3282
C 1119.3
(-1.9)
P 		789.3
(-2.5)
P 		508.5
(-3)
P 		3836.7
(3)
P 		3328
avr 1084.3
(-1.7) 		744.9
(-2.4) 		422.6
(-3) 		3549.1
(3) 		3127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1537
1 2 3 4 5 6 range
A 1055.6
(-2.4)
P 		938.3
(-3)
P 		1398.9
(-0.8)
P 		2205.8
(3)
P 		2185.2
(2.9)
P 		1025.3
(-2.6)
P 		1268
B 1120.2
(-2.6)
P 		1036
(-3)
P 		1104.3
(-2.7)
P 		2209.7
(1.9)
P 		2468.5
(3)
P 		1498.5
(-1.1)
P 		1433
C 931.9
(-3)
P 		1114.6
(-2.3)
P 		986.3
(-2.8)
P 		2433.9
(3)
P 		1905.9
(0.9)
P 		1563.2
(-0.5)
P 		1502
avr 1035.9
(-3) 		1029.6
(-3) 		1163.2
(-2.4) 		2283.1
(3) 		2186.5
(2.5) 		1362.3
(-1.4) 		1254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 398
(2)
P 		133.9
(-2.4)
P 		99.4
(-3)
P 		461
(3)
P 		362
B 331.8
(-0.9)
P 		204.7
(-2)
P 		87.9
(-3)
P 		780.3
(3)
P 		692
C 370.5
(-0.5)
P 		226.9
(-2.4)
P 		177.2
(-3)
P 		646.9
(3)
P 		470
avr 366.8
(-0.1) 		188.5
(-2.2) 		121.5
(-3) 		629.4
(3) 		508

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 808
1 2 3 4 5 6 range
A 194.6
(-3)
P 		333.7
(-1.2)
P 		304.7
(-1.6)
P 		559.4
(1.7)
P 		659.4
(3)
P 		249.6
(-2.3)
P 		465
B 389.8
(-2)
P 		344.8
(-2.4)
P 		268.2
(-3)
P 		585.3
(-0.4)
P 		1002.9
(3)
P 		558.8
(-0.6)
P 		735
C 345.4
(-1.5)
P 		340.1
(-1.5)
P 		251
(-3)
P 		489.5
(0.9)
P 		616.7
(3)
P 		523.3
(1.5)
P 		366
avr 309.9
(-2.6) 		339.5
(-2.2) 		274.6
(-3) 		544.7
(0.3) 		759.7
(3) 		443.9
(-0.9) 		485
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178432_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12847
Sequence Type Exemplar sequence
Representative Public ID ZC443.3 NCBI
Target Description ZC443.3 /REP_DB=WormBase Gene ID /WP=CE06587 /TR=Q23321 /GB=CAA99948.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073806 NCBI Caenorhabditis elegans ZC443.3 (ZC443.3) mRNA, complete cds. 11/11 None
SNAP00000030944 ENSEMBL cdna:SNAP chromosome:CEL140:V:12815181:12816709:-1 11/11 None
GENEFINDER00000030951 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12815181:12816709:-1 11/11 None
ZC443.3.1 ENSEMBL cdna:known chromosome:CEL140:V:12814907:12816711:-1 gene:ZC443.3 11/11 None
ZC443.3.2 ENSEMBL cdna:known chromosome:CEL140:V:12814909:12816713:-1 gene:ZC443.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12815180-12816709(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC443.3
Entrez Gene 179758 Entrez gene
SwissProt Q23321 EMBL-EBI
WormBase CE06587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99948 Hypothetical protein ZC443.3 [Caenorhabditis elegans] ref|NP_506207.1| ZC443.3 [Caenorhabditis elegans] 0.0
blast CAE64004 Hypothetical protein CBG08598 [Caenorhabditis briggsae] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:178432_S_AT
ggaggaatgtgagcttgttctgaacaaaatcagattaaaccgaacactccaaaagattga
agagctggaaaagaaaaacgtgtcggttgtttgtgaactgaccaaaccagaaactgttgt
agccgcgcctgtgcaagttgaaaatgtcattatttcattgccggttaaagaagatgattc
acttgccatatctgctgcaaaagctaatcttattcaaaaaaagcatcaatcgaaaagtag
tacagaaaagtcgatgatgtctgtgacaaagaaacacgaagcaaaattcaaagttgctaa
atctgtaactgtgaaaaaggataaaactgaaaaatctgaaaaccttaaatcagatgttcc
cgaaaagacgaatgaagttacaattgcagcatctcttttagaagatgttatggagcaact
gaacttggatgacaagaagaacacaaaagctgcgtcacaatcgaaaattgtggacgatgc
gagtgattccgatagtcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAATGTGAGCTTGTTCTGAAC 626 515 630 Antisense
AATCAGATTAAACCGAACACTCCAA 671 167 657 Antisense
GTGTCGGTTGTTTGTGAACTGACCA 73 487 709 Antisense
AACCAGAAACTGTTGTAGCCGCGCC 265 145 734 Antisense
TAGCCGCGCCTGTGCAAGTTGAAAA 631 651 749 Antisense
GATGATTCACTTGCCATATCTGCTG 163 411 802 Antisense
GCCATATCTGCTGCAAAAGCTAATC 353 281 814 Antisense
GAAAACCTTAAATCAGATGTTCCCG 657 351 967 Antisense
GTTACAATTGCAGCATCTCTTTTAG 701 445 1006 Antisense
GGAGCAACTGAACTTGGATGACAAG 495 519 1041 Antisense
GATGCGAGTGATTCCGATAGTCATG 306 415 1105 Antisense
Sequence Source Affymetrix Proprietary Database