[Home] | [Total List]

[178430_at]

Description C35C5.9 /REP_DB=WormBase Gene ID /WP=CE08587 /TR=Q93333 /GB=CAB01689.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 84      6grp_total > 57      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1362
1 2 3 4 range
A 494.5
(-2.5)
P 		601.4
(-2.1)
P 		396.1
(-3)
P 		1706.1
(3)
P 		1310
B 512.5
(-2.7)
P 		523.5
(-2.6)
P 		453.7
(-3)
P 		1510.6
(3)
P 		1057
C 624.8
(-1.7)
P 		479.7
(-2.4)
P 		344.6
(-3)
P 		1673.2
(3)
P 		1329
avr 543.9
(-2.3) 		534.9
(-2.3) 		398.1
(-3) 		1630
(3) 		1232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 662
1 2 3 4 5 6 range
A 540.7
(0.7)
P 		403.5
(-2.5)
P 		639.5
(3)
P 		383.6
(-3)
P 		445.9
(-1.5)
P 		624.5
(2.6)
P 		256
B 572.2
(-0.9)
P 		612.1
(0.4)
P 		547.4
(-1.7)
P 		551.9
(-1.5)
P 		506.5
(-3)
P 		690.5
(3)
P 		184
C 549.1
(-0.2)
P 		641
(0.6)
P 		377.6
(-1.8)
P 		240.9
(-3)
P 		487.3
(-0.8)
P 		902.7
(3)
P 		662
avr 554
(-0.2) 		552.2
(-0.2) 		521.5
(-0.8) 		392.1
(-3) 		479.9
(-1.5) 		739.2
(3) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 180
(0.1)
P 		130.5
(-1.9)
P 		103.6
(-3)
P 		249.7
(3)
P 		146
B 163.4
(-1.4)
P 		129.3
(-2.3)
P 		105.1
(-3)
P 		321.9
(3)
P 		217
C 206.8
(0.2)
P 		137.9
(-2.3)
P 		120.1
(-3)
P 		282.1
(3)
P 		162
avr 183.4
(-0.5) 		132.6
(-2.2) 		109.6
(-3) 		284.6
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 99.7
(-2.7)
P 		143.5
(2.1)
P 		139.3
(1.6)
P 		97.3
(-3)
P 		134.6
(1.1)
P 		152
(3)
P 		55
B 199.1
(0.2)
P 		203.8
(0.4)
P 		132.9
(-3)
P 		146.2
(-2.4)
P 		205.8
(0.5)
P 		257.5
(3)
P 		125
C 203.5
(0.7)
P 		195.6
(0.5)
P 		96.1
(-1.9)
P 		48.5
(-3)
P 		157.7
(-0.4)
P 		302.2
(3)
P 		254
avr 167.4
(0) 		181
(0.6) 		122.8
(-1.9) 		97.3
(-3) 		166
(-0.1) 		237.2
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16842
Sequence Type Exemplar sequence
Representative Public ID C35C5.9 NCBI
Target Description C35C5.9 /REP_DB=WormBase Gene ID /WP=CE08587 /TR=Q93333 /GB=CAB01689.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077526(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077526 NCBI Caenorhabditis elegans C35C5.9 (C35C5.9) mRNA, complete cds. 9/11 None
C35C5.9 ENSEMBL cdna:known chromosome:CEL140:X:11536716:11537027:1 gene:C35C5.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005115 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11536715-11537029(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35C5.9
Entrez Gene 183231 Entrez gene
SwissProt Q93333 EMBL-EBI
WormBase CE31437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01689 Hypothetical protein C35C5.9 [Caenorhabditis elegans] ref|NP_509927.2| C35C5.9 [Caenorhabditis elegans] 5.0E-17
blast CAE70621 Hypothetical protein CBG17305 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:178430_AT
gtcgattgaacatgacgttaaacgagatgtgaagcgcgttgcaactgacatcaagcacac
cattcgccctccatggtacagacgagcttggagtaaaccgcgtccgaagaattttcaaga
gataattttcatttctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATTGAACATGACGTTAAACGA 448 473 15 Antisense
GACGTTAAACGAGATGTGAAGCGCG 152 375 28 Antisense
GAGATGTGAAGCGCGTTGCAACTGA 28 397 38 Antisense
GTGAAGCGCGTTGCAACTGACATCA 272 481 43 Antisense
GCGCGTTGCAACTGACATCAAGCAC 638 287 48 Antisense
AACTGACATCAAGCACACCATTCGC 33 143 57 Antisense
GCCCTCCATGGTACAGACGAGCTTG 144 287 80 Antisense
ACGAGCTTGGAGTAAACCGCGTCCG 502 93 96 Antisense
GCTTGGAGTAAACCGCGTCCGAAGA 67 235 100 Antisense
ACCGCGTCCGAAGAATTTTCAAGAG 175 3 111 Antisense
TCAAGAGATAATTTTCATTTCTATG 28 633 129 Antisense
Sequence Source Affymetrix Proprietary Database