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[178428_at]

Description W06D4.3 /REP_DB=WormBase Gene ID /WP=CE16545 /TR=Q9XW43 /GB=CAA22251.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 23      6grp_total > 59      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 44.3
(-3)
P 		70.1
(-1)
A 		77.1
(-0.4)
P 		121.1
(3)
P 		77
B 44.1
(-3)
P 		60.4
(0.9)
P 		62.1
(1.3)
A 		69.3
(3)
P 		25
C 42.5
(-1.6)
P 		55.3
(-0)
P 		30.7
(-3)
A 		80.1
(3)
A 		49
avr 43.6
(-3) 		61.9
(-0.6) 		56.6
(-1.3) 		90.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 74
(1.6)
P 		32.4
(-3)
A 		44.7
(-1.6)
A 		63
(0.4)
P 		78.4
(2.1)
P 		87
(3)
P 		55
B 95
(2.3)
P 		55.6
(-1.7)
P 		42.5
(-3)
M 		63.1
(-0.9)
P 		78.5
(0.6)
P 		102.2
(3)
P 		60
C 58
(-0.8)
A 		53.7
(-1.2)
P 		32.5
(-3)
A 		102.3
(2.9)
A 		57
(-0.9)
P 		103.1
(3)
P 		71
avr 75.7
(0.7) 		47.2
(-2.2) 		39.9
(-3) 		76.1
(0.8) 		71.3
(0.3) 		97.4
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 16.1
(-1.9)
P 		15.2
(-3)
A 		20.1
(3)
P 		17.7
(0.1)
P 		5
B 14
(-3)
P 		14.9
(3)
P 		14.4
(-0.3)
A 		14.8
(2.3)
P 		1
C 14.1
(0.9)
P 		15.9
(3)
P 		10.7
(-3)
A 		13.5
(0.2)
A 		5
avr 14.7
(-3) 		15.3
(3) 		15.1
(1) 		15.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 13.6
(-1.3)
P 		11.5
(-2.2)
A 		9.7
(-3)
A 		16
(-0.3)
P 		23.7
(3)
P 		21.2
(1.9)
P 		14
B 33
(1.9)
P 		18.5
(-1.2)
P 		10.3
(-3)
M 		16.7
(-1.6)
P 		31.9
(1.7)
P 		38.1
(3)
P 		28
C 21.5
(0)
A 		16.4
(-1.1)
P 		8.3
(-3)
A 		20.6
(-0.2)
A 		18.4
(-0.7)
P 		34.5
(3)
P 		26
avr 22.7
(0.6) 		15.5
(-1.3) 		9.4
(-3) 		17.8
(-0.7) 		24.7
(1.2) 		31.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.357
Sequence Type Exemplar sequence
Representative Public ID W06D4.3 NCBI
Target Description W06D4.3 /REP_DB=WormBase Gene ID /WP=CE16545 /TR=Q9XW43 /GB=CAA22251.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060034 NCBI Caenorhabditis elegans W06D4.3 (W06D4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000003045 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9066672:9068578:1 11/11 None
SNAP00000003038 ENSEMBL cdna:SNAP chromosome:CEL140:I:9067013:9068578:1 11/11 None
W06D4.3 ENSEMBL cdna:known chromosome:CEL140:I:9067013:9068578:1 gene:W06D4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9066943-9068509(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D4.3
Entrez Gene 189239 Entrez gene
SwissProt Q9XW43 EMBL-EBI
WormBase CE16545 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6897 endocytosis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22251 Hypothetical protein W06D4.3 [Caenorhabditis elegans] ref|NP_492435.1| W06D4.3 [Caenorhabditis elegans] 1.0E-154
blast CAA22251 Hypothetical protein W06D4.3 [Caenorhabditis elegans] ref|NP_492435.1| W06D4.3 [Caenorhabditis elegans] 1.0E-152
blast AAB09150 Hypothetical protein F38A5.6 [Caenorhabditis elegans] ref|NP_501011.1| F38A5.6 [Caenorhabditis elegans] 1.0E-95
blast AAB09150 Hypothetical protein F38A5.6 [Caenorhabditis elegans] ref|NP_501011.1| F38A5.6 [Caenorhabditis elegans] 3.0E-94
blast CAE73213 Hypothetical protein CBG20618 [Caenorhabditis briggsae] 9.0E-78
Sequence
Target Sequence 
>C. ELEGANS:178428_AT
ggtgaacgctatcgaacttcaagttcaagttgatccaaaggcaatagtaaagaatcaagt
tttgtgtgatcccgatgaaagtccatgggaattgcttggaggatggatcaattatatggg
tacatatcattttaatggtccccaatcaaaaatactcgatgcctacagtattgcttgtgg
aaaaattggtcaaaaagagcgacagctccagaaaagaacacggtctcattgtatcaaaaa
gatgaggatgtacactgcagatgaaagcgttgaattgaacaatcatgtcgctcatctcaa
ggatcttcttattgcaattgatgattcacgacatcaactgaaatcatcaagaacaacaaa
agaagttaaagcaaaaggtgaaatctaccgtaagaacattcaagctttcaattgtaccgc
aaacgaagttcaagccaggttggatgaagttccaatgattgttccacatcatgagaatga
acttttgaagttttcccgtgaagtgtcgattttcaacaattctgtggaaaacttgctgaa
agaagtggtcttccgtcttggatatggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGAACGCTATCGAACTTCAAGTT 299 497 222 Antisense
GTGTGATCCCGATGAAAGTCCATGG 25 487 285 Antisense
ATGGTCCCCAATCAAAAATACTCGA 365 1 356 Antisense
ACTCGATGCCTACAGTATTGCTTGT 50 99 375 Antisense
AAGAACACGGTCTCATTGTATCAAA 273 151 435 Antisense
TGAACAATCATGTCGCTCATCTCAA 427 573 497 Antisense
ATTCAAGCTTTCAATTGTACCGCAA 1 13 619 Antisense
GTACCGCAAACGAAGTTCAAGCCAG 123 459 635 Antisense
GAAGTTTTCCCGTGAAGTGTCGATT 609 321 708 Antisense
GTGTCGATTTTCAACAATTCTGTGG 563 487 724 Antisense
GTGGTCTTCCGTCTTGGATATGGCA 178 487 766 Antisense
Sequence Source Affymetrix Proprietary Database